QuasR: quantification and annotation of short reads in R

被引：208

作者：

Gaidatzis, Dimos ^{[1
,2
]}

Lerch, Anita ^{[1
,2
]}

Hahne, Florian ^{[3
]}

Stadler, Michael B. ^{[1
,2
]}

机构：

[1] Friedrich Miescher Inst Biomed Res, CH-4058 Basel, Switzerland

[2] Swiss Inst Bioinformat, CH-4058 Basel, Switzerland

[3] Novartis Inst Biomed Res, CH-4057 Basel, Switzerland

来源：

BIOINFORMATICS | 2015年 / 31卷 / 07期

关键词：

DIFFERENTIAL EXPRESSION ANALYSIS; BIOCONDUCTOR PACKAGE;

D O I：

10.1093/bioinformatics/btu781

中图分类号：

Q5 [生物化学];

学科分类号：

071010 ; 081704 ;

摘要：

A Summary: QuasR is a package for the integrated analysis of high-throughput sequencing data in R, covering all steps from read preprocessing, alignment and quality control to quantification. QuasR supports different experiment types (including RNA-seq, ChIP-seq and Bis-seq) and analysis variants (e.g. paired-end, stranded, spliced and allele-specific), and is integrated in Bioconductor so that its output can be directly processed for statistical analysis and visualization.

引用

页码：1130 / 1132

页数：3

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