Clonal dissemination of carbapenem-resistant Klebsiella pneumoniae ST16 co-producing NDM-1 and OXA-232 in Thailand

被引:12
作者
Abe, Ryuichiro [1 ,2 ]
Akeda, Yukihiro [1 ,3 ,4 ]
Takeuchi, Dan [1 ]
Sakamoto, Noriko [1 ,5 ]
Sugawara, Yo [1 ,5 ]
Yamamoto, Norihisa [3 ]
Kerdsin, Anusak [6 ]
Matsumoto, Yuki [7 ]
Motooka, Daisuke [7 ]
Leolerd, Warawut [8 ]
Santanirand, Pitak [8 ]
Suzuki, Masato [5 ]
Shibayama, Keigo [9 ]
Tomono, Kazunori [3 ]
Iida, Tetsuya [1 ,2 ,8 ,10 ]
Hamada, Shigeyuki [1 ]
机构
[1] Osaka Univ, Japan Thailand Res Collaborat Ctr Emerging & Reem, Res Inst Microbial Dis, Osaka, Japan
[2] Osaka Univ, Res Inst Microbial Dis, Dept Bacterial Infect, Osaka, Japan
[3] Osaka Univ, Grad Sch Med, Dept Infect Control & Prevent, Osaka, Japan
[4] Natl Inst Infect Dis, Dept Bacteriol 1, Tokyo, Japan
[5] Natl Inst Infect Dis, Antimicrobial Resistance Res Ctr, Tokyo, Japan
[6] Kasetsart Univ, Fac Publ Hlth, Chalermphrakiat Sakon Nakhon Prov Campus, Sakon Nakhon, Thailand
[7] Osaka Univ, Res Inst Microbial Dis, Dept Infect Metagen, Osaka, Japan
[8] Mahidol Univ, Ramathibodi Hosp, Fac Med, Bangkok, Thailand
[9] Natl Inst Infect Dis, Dept Bacteriol 2, Tokyo, Japan
[10] Osaka Univ, Ctr Infect Dis Educ & Res, Osaka, Japan
来源
JAC-ANTIMICROBIAL RESISTANCE | 2022年 / 4卷 / 04期
关键词
D O I
10.1093/jacamr/dlac084
中图分类号
R51 [传染病];
学科分类号
100401 ;
摘要
Background Klebsiella pneumoniae ST258 and ST11 carrying bla(KPC) are among the most widespread carbapenem-resistant K. pneumoniae strains worldwide. Our carbapenem-resistant Enterobacteriaceae surveillance in Thailand revealed a nationwide dissemination of K. pneumoniae ST16 isolates carrying bla(NDM-1) and bla(OXA-232). Objectives To analyse the genomic details of this nationwide dissemination by focusing on plasmids and virulence factors. Methods Using WGS data of 119 K. pneumoniae ST16 isolates carrying bla(NDM-1) obtained in our previous surveillance study, clonality of chromosomes and plasmids of the isolates with carriage of virulence factors was evaluated. Results Of the 119 isolates, 111 carried plasmid pKP151_NDM1, and all 104 isolates harbouring bla(OXA-232) carried plasmid pKP151_OXA232. These 104 K. pneumoniae ST16 isolates showing chromosomal clonality possessed both pKP151_NDM1 and pKP151_OXA232, demonstrating clonal dissemination of K. pneumoniae ST16 with these plasmids. The isolates had essentially similar virulence factors as those of K. pneumoniae ST16 clones carrying bla(KPC), which were recently reported as highly invasive clones in Brazil. Conclusions The potential global dissemination of these invasive clones with resistance to several antibiotics highlights the importance of appropriate monitoring and strict standard precautions.
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相关论文
共 14 条
[1]   An Emerging Clone, Klebsiella pneumoniae Carbapenemase 2-Producing K. pneumoniae Sequence Type 16, Associated With High Mortality Rates in a CC258-Endemic Setting [J].
Andrey, Diego O. ;
Dantas, Priscila Pereira ;
Martins, Willames B. S. ;
De Carvalho, Fabiola Marques ;
Almeida, Luiz Gonzaga Paula ;
Sands, Kirsty ;
Portal, Edward ;
Sauser, Julien ;
Cayo, Rodrigo ;
Nicolas, Marisa F. ;
Vasconcelos, Ana Tereza R. ;
Medeiros, Eduardo A. ;
Walsh, Timothy R. ;
Gales, Ana C. .
CLINICAL INFECTIOUS DISEASES, 2020, 71 (07) :E141-E150
[2]   Genomic and clinical characterisation of multidrug-resistant carbapenemase-producing ST231 and ST16 Klebsiella pneumoniae isolates colonising patients at Siriraj hospital, Bangkok, Thailand from 2015 to 2017 [J].
Boonyasiri, Adhiratha ;
Jauneikaite, Elita ;
Brinkac, Lauren M. ;
Greco, Chris ;
Lerdlamyong, Kanokorn ;
Tangkoskul, Teerawit ;
Nguyen, Kevin ;
Thamlikitkul, Visanu ;
Fouts, Derrick E. .
BMC INFECTIOUS DISEASES, 2021, 21 (01)
[3]   RASTtk: A modular and extensible implementation of the RAST algorithm for building custom annotation pipelines and annotating batches of genomes [J].
Brettin, Thomas ;
Davis, James J. ;
Disz, Terry ;
Edwards, Robert A. ;
Gerdes, Svetlana ;
Olsen, Gary J. ;
Olson, Robert ;
Overbeek, Ross ;
Parrello, Bruce ;
Pusch, Gordon D. ;
Shukla, Maulik ;
Thomason, James A., III ;
Stevens, Rick ;
Vonstein, Veronika ;
Wattam, Alice R. ;
Xia, Fangfang .
SCIENTIFIC REPORTS, 2015, 5
[4]   Integrated chromosomal and plasmid sequence analyses reveal diverse modes of carbapenemase gene spread among Klebsiella pneumoniae [J].
David, Sophia ;
Cohen, Victoria ;
Reuter, Sandra ;
Sheppard, Anna E. ;
Giani, Tommaso ;
Parkhill, Julian ;
Rossolini, Gian Maria ;
Feil, Edward J. ;
Grundmann, Hajo ;
Aanensen, David M. .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2020, 117 (40) :25043-25054
[5]   Genomics of Klebsiella pneumoniae ST16 producing NDM-1, CTX-M-15, and OXA-232 [J].
Espinal, P. ;
Nucleo, E. ;
Caltagirone, M. ;
Marchetti, V. Mattioni ;
Fernandes, M. R. ;
Biscaro, V ;
Rigoli, R. ;
Carattoli, A. ;
Migliavacca, R. ;
Villa, L. .
CLINICAL MICROBIOLOGY AND INFECTION, 2019, 25 (03) :385.e1-385.e5
[6]   Solving the Problem of Comparing Whole Bacterial Genomes across Different Sequencing Platforms [J].
Kaas, Rolf S. ;
Leekitcharoenphon, Pimlapas ;
Aarestrup, Frank M. ;
Lund, Ole .
PLOS ONE, 2014, 9 (08)
[7]   The Sequence Alignment/Map format and SAMtools [J].
Li, Heng ;
Handsaker, Bob ;
Wysoker, Alec ;
Fennell, Tim ;
Ruan, Jue ;
Homer, Nils ;
Marth, Gabor ;
Abecasis, Goncalo ;
Durbin, Richard .
BIOINFORMATICS, 2009, 25 (16) :2078-2079
[8]  
Li H, 2009, BIOINFORMATICS, V25, P1754, DOI [10.1093/bioinformatics/btp324, 10.1093/bioinformatics/btp698, 10.1093/bioinformatics/btp352]
[9]   Spreading Patterns of NDM-Producing Enterobacteriaceae in Clinical and Environmental Settings in Yangon, Myanmar [J].
Sugawara, Yo ;
Akeda, Yukihiro ;
Hagiya, Hideharu ;
Sakamoto, Noriko ;
Takeuchi, Dan ;
Shanmugakani, Rathina Kumar ;
Motooka, Daisuke ;
Nishi, Isao ;
Zin, Khwar Nyo ;
Aye, Mya Mya ;
Myint, Thuzar ;
Tomono, Kazunori ;
Hamadaa, Shigeyuki .
ANTIMICROBIAL AGENTS AND CHEMOTHERAPY, 2019, 63 (03)
[10]   Easyfig: a genome comparison visualizer [J].
Sullivan, Mitchell J. ;
Petty, Nicola K. ;
Beatson, Scott A. .
BIOINFORMATICS, 2011, 27 (07) :1009-1010