Serum Metabolomics Reveals Personalized Metabolic Patterns for Macular Neovascular Disease Patient Stratification

被引:22
作者
Liu, Kun [1 ]
Fang, Junwei [1 ,2 ,3 ]
Jin, Jing [1 ]
Zhu, Shaopin [1 ]
Xu, Xiaoyin [1 ]
Xu, Yupeng [1 ]
Ye, Bin [1 ]
Lin, Shu-Hai [2 ,3 ,4 ]
Xu, Xun [1 ]
机构
[1] Shanghai Jiao Tong Univ, Shanghai Gen Hosp, Dept Ophthalmol, Sch Med, Shanghai 200040, Peoples R China
[2] Shanghai Gen Hosp, Shanghai Engn Ctr Visual Sci & Photomed, Shanghai Key Lab Ocular Fundus Dis, Shanghai 200040, Peoples R China
[3] Shanghai Jiao Tong Univ, Coll Basic Med Sci, Sch Med, Shanghai 200025, Peoples R China
[4] Xiamen Univ, Sch Life Sci, State Key Lab Cellular Stress Biol, Xiamen 361005, Fujian, Peoples R China
关键词
metabolomics; GC-MS; choroidal neovascularization; AMD; PCV; PM; multivariate analysis; OLPS-DA; ROC; biomarkers; POLYPOIDAL CHOROIDAL VASCULOPATHY; PENTOSE-PHOSPHATE PATHWAY; OXIDATIVE STRESS; DEGENERATION; INFLAMMATION; GLYCOLYSIS; MARKERS;
D O I
10.1021/acs.jproteome.9b00574
中图分类号
Q5 [生物化学];
学科分类号
071010 ; 081704 ;
摘要
The macular neovascular disease is a group disorder with complex pathogenesis of neovascularization for vision impairment and irreversible blindness, posing great challenges to precise diagnosis and management. We prospectively recruited participants with age-related macular degeneration (AMD), polypoidal choroidal vasculopathy (PCV), and pathological myopia (PM) and compared with cataract patients without fundus diseases as a control group. The serum metabolome was profiled by gas chromatography coupled with time-of-flight mass spectrometry (GC-TOFMS) analysis. Multivariate statistical methods as well as data mining were performed for interpretation of macular neovascularization. A total of 446 participants with macular neovascularization and 138 cataract subjects as the control group were enrolled in this study. By employing GC-TOFMS, 131 metabolites were identified and 33 differentiating metabolites were highlighted in patients with macular neovascularization. For differential diagnosis, three panels of specific metabolomics-based biomarkers provided areas under the curve of 0.967, 0.938, and 0.877 in the discovery phase (n = 328) and predictive values of 87.3%, 79%, and 85.7% in the test phase (n = 256). Personalized pathway dysregulation scores measurement using Lilikoi package in R language revealed the pentose phosphate pathway and mitochondrial electron transport chain as the most important pathways in AMD; purine metabolism and glycolysis were identified as the major disturbed pathways in PCV, while the altered thiamine metabolism and purine metabolism may contribute to PM phenotypes. Serum metabolomics are powerful for characterizing metabolic disturbances of the macular neovascular disease. Differences in metabolic pathways may reflect an underlying macular neovascular disease and serve as therapeutic targets for macular neovascular treatment.
引用
收藏
页码:699 / 707
页数:9
相关论文
共 43 条
[1]   Lilikoi: an R package for personalized pathway-based classification modeling using metabolomics data [J].
Al-Akwaa, Fadhl M. ;
Yunits, Breck ;
Huang, Sijia ;
Alhajaji, Hassam ;
Garmire, Lana X. .
GIGASCIENCE, 2018, 7 (12)
[2]   Indocyanine green angiography in high myopia [J].
Axer-Siegez, R ;
Cotlear, D ;
Prie, E ;
Rosenblatt, I ;
Snir, M ;
Weinberger, D .
OPHTHALMIC SURGERY LASERS & IMAGING, 2004, 35 (02) :139-145
[3]   Human retinal pigment epithelial cells prefer proline as a nutrient and transport metabolic intermediates to the retinal side [J].
Chao, Jennifer R. ;
Knight, Kaitlen ;
Engel, Abbi L. ;
Jankowski, Connor ;
Wang, Yekai ;
Manson, Megan A. ;
Gu, Haiwei ;
Djukovic, Danijel ;
Raftery, Daniel ;
Hurley, James B. ;
Du, Jianhai .
JOURNAL OF BIOLOGICAL CHEMISTRY, 2017, 292 (31) :12895-12905
[4]   Customized Consensus Spectral Library Building for Untargeted Quantitative Metabolomics Analysis with Data Independent Acquisition Mass Spectrometry and MetaboDlA Workflow [J].
Chen, Gengbo ;
Walmsley, Scott ;
Cheung, Gemmy C. M. ;
Chen, Liyan ;
Cheng, Ching-Yu ;
Beuerman, Roger W. ;
Wong, Tien Yin ;
Zhou, Lei ;
Choi, Hyungwon .
ANALYTICAL CHEMISTRY, 2017, 89 (09) :4897-4906
[5]   Enhanced Fructose Utilization Mediated by SLC2A5 Is a Unique Metabolic Feature of Acute Myeloid Leukemia with Therapeutic Potential [J].
Chen, Wen-Lian ;
Wang, Yue-Ying ;
Zhao, Aihua ;
Xia, Li ;
Xie, Guoxiang ;
Su, Mingming ;
Zhao, Linjing ;
Liu, Jiajian ;
Qu, Chun ;
Wei, Runmin ;
Rajani, Cynthia ;
Ni, Yan ;
Cheng, Zhen ;
Chen, Zhu ;
Chen, Sai-Juan ;
Jia, Wei .
CANCER CELL, 2016, 30 (05) :779-791
[6]   Polypoidal Choroidal Vasculopathy Definition, Pathogenesis, Diagnosis, and Management [J].
Cheung, Chui Ming Gemmy ;
Lai, Timothy Y. Y. ;
Ruamviboonsuk, Paisan ;
Chen, Shih-Jen ;
Chen, Youxin ;
Freund, K. Bailey ;
Gomi, Fomi ;
Koh, Adrian H. ;
Lee, Won-Ki ;
Wong, Tien Yin .
OPHTHALMOLOGY, 2018, 125 (05) :708-724
[7]   Myopic Choroidal Neovascularization Review, Guidance, and Consensus Statement on Management [J].
Cheung, Chui Ming Gemmy ;
Arnold, Jennifer J. ;
Holz, Frank G. ;
Park, Kyu Hyung ;
Lai, Timothy Y. Y. ;
Larsen, Michael ;
Mitchell, Paul ;
Ohno-Matsui, Kyoko ;
Chen, Shih-Jen ;
Wolf, Sebastian ;
Wong, Tien Yin .
OPHTHALMOLOGY, 2017, 124 (11) :1690-1711
[8]   The Pentose Phosphate Pathway as a Potential Target for Cancer Therapy [J].
Cho, Eunae Sandra ;
Cha, Yong Hoon ;
Kim, Hyun Sil ;
Kim, Nam Hee ;
Yook, Jong In .
BIOMOLECULES & THERAPEUTICS, 2018, 26 (01) :29-38
[9]   Candidate gene analysis suggests a role for fatty acid biosynthesis and regulation of the complement system in the etiology of age-related maculopathy [J].
Conley, YP ;
Thalamuthu, A ;
Jakobsdottir, J ;
Weeks, DE ;
Mah, T ;
Ferrell, RE ;
Gorin, MB .
HUMAN MOLECULAR GENETICS, 2005, 14 (14) :1991-2002
[10]   Can long-term thiamine treatment improve the clinical outcomes of myotonic dystrophy type 1? [J].
Costantini, Antonio ;
Trevi, Erika ;
Pala, Maria Immacolata ;
Fancellu, Roberto .
NEURAL REGENERATION RESEARCH, 2016, 11 (09) :1487-1491