A logical network-based drug-screening platform for Alzheimer's disease representing pathological features of human brain organoids

被引:128
作者
Park, Jong-Chan [1 ,2 ,3 ,4 ]
Jang, So-Yeong [5 ]
Lee, Dongjoon [1 ,3 ]
Lee, Jeongha [1 ]
Kang, Uiryong [5 ]
Chang, Hongjun [5 ]
Kim, Haeng Jun [1 ,3 ]
Han, Sun-Ho [1 ,2 ,3 ]
Seo, Jinsoo [6 ]
Choi, Murim [1 ]
Lee, Dong Young [7 ,8 ,9 ]
Byun, Min Soo [10 ]
Yi, Dahyun [7 ]
Cho, Kwang-Hyun [5 ]
Mook-Jung, Inhee [1 ,2 ,3 ]
机构
[1] Seoul Natl Univ, Coll Med, Dept Biochem & Biomed Sci, Seoul 03080, South Korea
[2] Seoul Natl Univ, Coll Med, Med Res Ctr, Neurosci Res Inst, Seoul 03080, South Korea
[3] Seoul Natl Univ, Coll Med, SNU Dementia Res Ctr, Seoul 03080, South Korea
[4] UCL, Dept Neurodegenerat Dis, UCL Queen Sq Inst Neurol, London WC1N 3BG, England
[5] Korea Adv Inst Sci & Technol KAIST, Dept Bio & Brain Engn, Daejeon 34141, South Korea
[6] Daegu Gyeongbuk Inst Sci & Technol DGIST, Dept Brain & Cognit Sci, Daegu 42988, South Korea
[7] Seoul Natl Univ, Med Res Ctr, Inst Human Behav Med, Seoul 03080, South Korea
[8] Seoul Natl Univ, Coll Med, Dept Psychiat, Seoul 03080, South Korea
[9] Seoul Natl Univ Hosp, Dept Neuropsychiat, Seoul 03080, South Korea
[10] Seoul Natl Univ, Dept Neuropsychiat, Bundang Hosp, Seongnam 13620, South Korea
基金
新加坡国家研究基金会;
关键词
A-BETA; SYSTEMS BIOLOGY; R PACKAGE; DYNAMICS; MECHANISMS; MODEL; TAU; INHIBITION; PATHWAY; TRIALS;
D O I
10.1038/s41467-020-20440-5
中图分类号
O [数理科学和化学]; P [天文学、地球科学]; Q [生物科学]; N [自然科学总论];
学科分类号
07 ; 0710 ; 09 ;
摘要
Developing effective drugs for Alzheimer's disease (AD), the most common cause of dementia, has been difficult because of complicated pathogenesis. Here, we report an efficient, network-based drug-screening platform developed by integrating mathematical modeling and the pathological features of AD with human iPSC-derived cerebral organoids (iCOs), including CRISPR-Cas9-edited isogenic lines. We use 1300 organoids from 11 participants to build a high-content screening (HCS) system and test blood-brain barrierpermeable FDA-approved drugs. Our study provides a strategy for precision medicine through the convergence of mathematical modeling and a miniature pathological brain model using iCOs.
引用
收藏
页数:13
相关论文
共 78 条
  • [1] Logical Modeling and Dynamical Analysis of Cellular Networks
    Abou-Jaoude, Wassim
    Traynard, Pauline
    Monteiro, PedroT.
    Saez-Rodriguez, Julio
    Helikar, Tomas
    Thieffry, Denis
    Chaouiya, Claudine
    [J]. FRONTIERS IN GENETICS, 2016, 7
  • [2] A Breakdown in Metabolic Reprogramming Causes Microglia Dysfunction in Alzheimer's Disease
    Baik, Sung Hoon
    Kang, Seokjo
    Lee, Woochan
    Choi, Hayoung
    Chung, Sunwoo
    Kim, Jong-Il
    Mook-Jung, Inhee
    [J]. CELL METABOLISM, 2019, 30 (03) : 493 - +
  • [3] Calcium Signalling and Alzheimer's Disease
    Berridge, Michael J.
    [J]. NEUROCHEMICAL RESEARCH, 2011, 36 (07) : 1149 - 1156
  • [4] Alzheimer's disease: a mathematical model for onset and progression
    Bertsch, Michiel
    Franchi, Bruno
    Marcello, Norina
    Tesi, Maria Carla
    Tosin, Andrea
    [J]. MATHEMATICAL MEDICINE AND BIOLOGY-A JOURNAL OF THE IMA, 2017, 34 (02): : 193 - 214
  • [5] Amyloid-β and Tau The Trigger and Bullet in Alzheimer Disease Pathogenesis
    Bloom, George S.
    [J]. JAMA NEUROLOGY, 2014, 71 (04) : 505 - 508
  • [6] Korean Brain Aging Study for the Early Diagnosis and Prediction of Alzheimer's Disease: Methodology and Baseline Sample Characteristics
    Byun, Min Soo
    Yi, Dahyun
    Lee, Jun Ho
    Choe, Young Min
    Sohn, Bo Kyung
    Lee, Jun-Young
    Choi, Hyo Jung
    Baek, Hyewon
    Kim, Yu Kyeong
    Lee, Yun-Sang
    Sohn, Chul-Ho
    Mook-Jung, Inhee
    Choi, Murim
    Lee, Yu Jin
    Lee, Dong Woo
    Ryu, Seung-Ho
    Kim, Shin Gyeom
    Kim, Jee Wook
    Woo, Jong Inn
    Lee, Dong Young
    [J]. PSYCHIATRY INVESTIGATION, 2017, 14 (06) : 851 - +
  • [7] Inhibition of the canonical Wnt signaling pathway by apolipoprotein E4 in PC12 cells
    Caruso, Alessandra
    Motolese, Marta
    Iacovelli, Luisa
    Caraci, Filippo
    Copani, Agata
    Nicoletti, Ferdinando
    Terstappen, Georg C.
    Gaviraghi, Giovanni
    Caricasole, Andrea
    [J]. JOURNAL OF NEUROCHEMISTRY, 2006, 98 (02) : 364 - 371
  • [8] Transcriptome-wide noise controls lineage choice in mammalian progenitor cells
    Chang, Hannah H.
    Hemberg, Martin
    Barahona, Mauricio
    Ingber, Donald E.
    Huang, Sui
    [J]. NATURE, 2008, 453 (7194) : 544 - U10
  • [9] SBML qualitative models: a model representation format and infrastructure to foster interactions between qualitative modelling formalisms and tools
    Chaouiya, Claudine
    Berenguier, Duncan
    Keating, Sarah M.
    Naldi, Aurelien
    van Iersel, Martijn P.
    Rodriguez, Nicolas
    Draeger, Andreas
    Buechel, Finja
    Cokelaer, Thomas
    Kowal, Bryan
    Wicks, Benjamin
    Goncalves, Emanuel
    Dorier, Julien
    Page, Michel
    Monteiro, Pedro T.
    von Kamp, Axel
    Xenarios, Ioannis
    de Jong, Hidde
    Hucka, Michael
    Klamt, Steffen
    Thieffry, Denis
    Le Novere, Nicolas
    Saez-Rodriguez, Julio
    Helikar, Tomas
    [J]. BMC SYSTEMS BIOLOGY, 2013, 7
  • [10] Enrichr: interactive and collaborative HTML']HTML5 gene list enrichment analysis tool
    Chen, Edward Y.
    Tan, Christopher M.
    Kou, Yan
    Duan, Qiaonan
    Wang, Zichen
    Meirelles, Gabriela Vaz
    Clark, Neil R.
    Ma'ayan, Avi
    [J]. BMC BIOINFORMATICS, 2013, 14