Handling gene redundancy in microarray data using Grey Relational Analysis

被引:9
作者
Zhang, Li-Juan [2 ]
Li, Zhou-Jun [1 ]
机构
[1] Beihang Univ, Sch Engn & Comp Sci, Beijing 100083, Peoples R China
[2] Natl Lab Parallel & Distributed Proc, Changsha 410073, Peoples R China
关键词
gene selection; grey relational analysis; microarray; GRA; gene redundancy; data mining; bioinformatics;
D O I
10.1504/IJDMB.2008.019094
中图分类号
Q [生物科学];
学科分类号
07 ; 0710 ; 09 ;
摘要
Gene selection is one of the important and frequently used techniques for microarray data classification. In this paper, we introduce a new metric to measure gcne-class relevance and gene-gene redundancy. The new metric is based on Grey Relational Analysis (GRA), called Grey Relational Grade (GRG), and ricver used in gene selection before. Based on the GRG, we develop a nc\v gene selection method. WhiCh uses GRG to group similar genes to clusters, and then select inforniative genes frorri each cluster to avoid n redundancy. Experiments on public data sets demonstrate the effectiveness of the proposed method.
引用
收藏
页码:134 / 144
页数:11
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