Computational Structural Biology: Successes, Future Directions, and Challenges

被引:16
作者
Nussinov, Ruth [1 ,2 ]
Tsai, Chung-Jung [1 ]
Shehu, Amarda [3 ,4 ,5 ]
Jang, Hyunbum [1 ]
机构
[1] Frederick Natl Lab Canc Res, Computat Struct Biol Sect, Basic Sci Program, Frederick, MD 21702 USA
[2] Tel Aviv Univ, Sackler Sch Med, Dept Human Genet & Mol Med, Sackler Inst Mol Med, IL-69978 Tel Aviv, Israel
[3] George Mason Univ, Dept Comp Sci, Fairfax, VA 22030 USA
[4] George Mason Univ, Dept Bioengn, Fairfax, VA 22030 USA
[5] George Mason Univ, Sch Syst Biol, Fairfax, VA 22030 USA
基金
美国国家卫生研究院; 美国国家科学基金会;
关键词
big data; machine intelligence; bioinformatics; biological modeling; free-energy landscape; mutations; PROTEIN; DYNAMICS; RAF; PREDICTION; MEMBRANE; PHOSPHORYLATION; ACTIVATION; CALMODULIN; COMPLEXES; ENSEMBLES;
D O I
10.3390/molecules24030637
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
Computational biology has made powerful advances. Among these, trends in human health have been uncovered through heterogeneous 'big data' integration, and disease-associated genes were identified and classified. Along a different front, the dynamic organization of chromatin is being elucidated to gain insight into the fundamental question of genome regulation. Powerful conformational sampling methods have also been developed to yield a detailed molecular view of cellular processes. when combining these methods with the advancements in the modeling of supramolecular assemblies, including those at the membrane, we are finally able to get a glimpse into how cells' actions are regulated. Perhaps most intriguingly, a major thrust is on to decipher the mystery of how the brain is coded. Here, we aim to provide a broad, yet concise, sketch of modern aspects of computational biology, with a special focus on computational structural biology. We attempt to forecast the areas that computational structural biology will embrace in the future and the challenges that it may face. We skirt details, highlight successes, note failures, and map directions.
引用
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页数:12
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