Artemis: sequence visualization and annotation

被引:2478
作者
Rutherford, K
Parkhill, J
Crook, J
Horsnell, T
Rice, P
Rajandream, MA
Barrell, B
机构
[1] Wellcome Trust Genome, Sanger Ctr, Cambridge CB10 1SA, England
[2] MRC, Mol Biol Lab, Cambridge CB2 2QH, England
基金
英国惠康基金; 英国医学研究理事会;
关键词
D O I
10.1093/bioinformatics/16.10.944
中图分类号
Q5 [生物化学];
学科分类号
071010 ; 081704 ;
摘要
Artemis is a DNA sequence visualization and annotation tool that allows the results of any analysis or sets of analyses to be viewed in the context of the sequence and its six-frame translation. Artemis is especially useful in analysing the compact genomes of bacteria, archaea and lower eukaryotes, and will cope with sequences of any size from small genes to whole genomes. It is implemented in Java, and can be run on any suitable platform. Sequences and annotation can be read and written directly in EMBL, GenBank and GFF format.
引用
收藏
页码:944 / 945
页数:2
相关论文
共 7 条
  • [1] ALTSCHUL SF, 1990, J MOL BIOL, V215, P403, DOI 10.1006/jmbi.1990.9999
  • [2] The EMBL Nucleotide Sequence Database
    Baker, W
    van den Broek, A
    Camon, E
    Hingamp, P
    Sterk, P
    Stoesser, G
    Tuli, MA
    [J]. NUCLEIC ACIDS RESEARCH, 2000, 28 (01) : 19 - 23
  • [3] GenBank
    Benson, DA
    Karsch-Mizrachi, I
    Lipman, DJ
    Ostell, J
    Rapp, BA
    Wheeler, DL
    [J]. NUCLEIC ACIDS RESEARCH, 2000, 28 (01) : 15 - 18
  • [4] THE RELATIONSHIP BETWEEN BASE COMPOSITION AND CODON USAGE IN BACTERIAL GENES AND ITS USE FOR THE SIMPLE AND RELIABLE IDENTIFICATION OF PROTEIN-CODING SEQUENCES
    BIBB, MJ
    FINDLAY, PR
    JOHNSON, MW
    [J]. GENE, 1984, 30 (1-3) : 157 - 166
  • [5] Asymmetric substitution patterns in the two DNA strands of bacteria
    Lobry, JR
    [J]. MOLECULAR BIOLOGY AND EVOLUTION, 1996, 13 (05) : 660 - 665
  • [6] The genome sequence of the food-borne pathogen Campylobacter jejuni reveals hypervariable sequences
    Parkhill, J
    Wren, BW
    Mungall, K
    Ketley, JM
    Churcher, C
    Basham, D
    Chillingworth, T
    Davies, RM
    Feltwell, T
    Holroyd, S
    Jagels, K
    Karlyshev, AV
    Moule, S
    Pallen, MJ
    Penn, CW
    Quail, MA
    Rajandream, MA
    Rutherford, KM
    van Vliet, AHM
    Whitehead, S
    Barrell, BG
    [J]. NATURE, 2000, 403 (6770) : 665 - 668
  • [7] IMPROVED TOOLS FOR BIOLOGICAL SEQUENCE COMPARISON
    PEARSON, WR
    LIPMAN, DJ
    [J]. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 1988, 85 (08) : 2444 - 2448