A Bayesian framework for adaptive selection, calibration, and validation of coarse-grained models of atomistic systems

被引:67
作者
Farrell, Kathryn [1 ]
Oden, J. Tinsley [1 ]
Faghihi, Danial [1 ]
机构
[1] Univ Texas Austin, Inst Computat Engn & Sci, Austin, TX 78712 USA
关键词
Coarse graining models; Bayesian inference; Output sensitivities; Model plausibility; Model validation; MOLECULAR-DYNAMICS; SENSITIVITY-ANALYSIS; FORCE-FIELD; POTENTIALS; SIMULATION; ENERGY; PROTEINS; PROGRAM; MELT;
D O I
10.1016/j.jcp.2015.03.071
中图分类号
TP39 [计算机的应用];
学科分类号
081203 ; 0835 ;
摘要
A general adaptive modeling algorithm for selection and validation of coarse-grained models of atomistic systems is presented. A Bayesian framework is developed to address uncertainties in parameters, data, and model selection. Algorithms for computing output sensitivities to parameter variances, model evidence and posterior model plausibilities for given data, and for computing what are referred to as Occam Categories in reference to a rough measure of model simplicity, make up components of the overall approach. Computational results are provided for representative applications. (C) 2015 Elsevier Inc. All rights reserved.
引用
收藏
页码:189 / 208
页数:20
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