Automated derivation of structural class symbols and extended Z′ descriptors for molecular crystal structures in the Cambridge Structural Database

被引:42
作者
Bond, Andrew D. [1 ]
机构
[1] Univ So Denmark, Dept Chem & Phys, DK-5230 Odense M, Denmark
关键词
D O I
10.1039/b800642c
中图分类号
O6 [化学];
学科分类号
0703 ;
摘要
Extended Z0 descriptors that distinguish cases in which molecules occupy crystallographically distinct special equivalent positions ( for example, Z0 1/ 2 + 1/ 2) are derived for 173 497 single- component molecular crystal structures in the Cambridge Structural Database. The extended Z0 descriptors are closely related to the structural class ( SC) symbols developed by Belsky and Zorky, and the SC symbol is also derived for each CSD entry. SC symbols express more information than Z0 descriptors, listing explicitly the crystallographic site symmetry for all crystallographically distinct molecules: for example, P1 , Z 2( 1 , 1 ). The Z0 descriptors are obtained from the SC symbols by taking the reciprocal of the order of each distinct crystallographic site- symmetry group. The automated methodology permits convenient identification and quantification of structures in the CSD that have more than one crystallographically distinct molecule, and it is shown that the proportion of these structures is slowly increasing.
引用
收藏
页码:411 / 415
页数:5
相关论文
共 16 条
[1]   The Cambridge Structural Database: a quarter of a million crystal structures and rising [J].
Allen, FH .
ACTA CRYSTALLOGRAPHICA SECTION B-STRUCTURAL SCIENCE, 2002, 58 (3 PART 1) :380-388
[2]   Comment on "On the presence of multiple molecules in the crystal asymmetric unit (Z′ > 1)'' by Gautam R.!Desiraju, CrystEngComm, 2007, 9, 91 [J].
Anderson, Kirsty M. ;
Steed, Jonathan W. .
CRYSTENGCOMM, 2007, 9 (04) :328-330
[3]   STRUCTURAL CLASSES AND SPACE-GROUPS OF ORGANIC HOMOMOLECULAR CRYSTALS - NEW STATISTICAL-DATA [J].
BELSKY, VK ;
ZORKAYA, ON ;
ZORKY, PM .
ACTA CRYSTALLOGRAPHICA SECTION A, 1995, 51 :473-481
[4]   TOWARDS A GRAMMAR OF CRYSTAL PACKING [J].
BROCK, CP ;
DUNITZ, JD .
CHEMISTRY OF MATERIALS, 1994, 6 (08) :1118-1127
[5]   New software for searching the Cambridge Structural Database and visualizing crystal structures [J].
Bruno, IJ ;
Cole, JC ;
Edgington, PR ;
Kessler, M ;
Macrae, CF ;
McCabe, P ;
Pearson, J ;
Taylor, R .
ACTA CRYSTALLOGRAPHICA SECTION B-STRUCTURAL SCIENCE CRYSTAL ENGINEERING AND MATERIALS, 2002, 58 :389-397
[6]   On the presence of multiple molecules in the crystal asymmetric unit (Z′ > 1) [J].
Desiraju, Gautam R. .
CRYSTENGCOMM, 2007, 9 (01) :91-92
[7]   Crystal structures of monohalogenated benzoic acids [J].
Grineva, Olga V. ;
Zorky, Petr M. ;
Rostov, Evgenij S. .
STRUCTURAL CHEMISTRY, 2007, 18 (04) :443-448
[8]   Further thoughts on crystal structures with Z′ > 1:: analysis of single-crystal structures determined using X-ray synchrotron and neutron radiation in the cambridge structural database [J].
Nichol, Gary S. ;
Clegg, William .
CRYSTENGCOMM, 2007, 9 (10) :959-960
[9]   SPACE-GROUP FREQUENCIES OF PROTEINS AND OF ORGANIC-COMPOUNDS WITH MORE THAN ONE FORMULA UNIT IN THE ASYMMETRIC UNIT [J].
PADMAJA, N ;
RAMAKUMAR, S ;
VISWAMITRA, MA .
ACTA CRYSTALLOGRAPHICA SECTION A, 1990, 46 :725-730
[10]   Should solid-state molecular packing have to obey the rules of crystallographic symmetry? [J].
Steed, JW .
CRYSTENGCOMM, 2003, :169-179