Perturbations of Transcription and Gene Expression-Associated Processes Alter Distribution of Cell Size Values in Saccharomyces cerevisiae

被引:8
作者
Maitra, Nairita [1 ]
Anandhakumar, Jayamani [1 ]
Blank, Heidi M. [1 ]
Kaplan, Craig D. [1 ]
Polymenis, Michael [1 ]
机构
[1] Texas A&M Univ, Dept Biochem & Biophys, College Stn, TX 77843 USA
来源
G3-GENES GENOMES GENETICS | 2019年 / 9卷 / 01期
基金
美国国家卫生研究院;
关键词
cell size; gamma distribution; RSC; RNA polymerase; THO; MESSENGER-RNA DEGRADATION; CYCLE PROGRESSION; DELETION STRAINS; DNA-CONTENT; YEAST; DIVISION; GROWTH; COMPLEX; IDENTIFICATION; HOMEOSTASIS;
D O I
10.1534/g3.118.200854
中图分类号
Q3 [遗传学];
学科分类号
071007 ; 090102 ;
摘要
The question of what determines whether cells are big or small has been the focus of many studies because it is thought that such determinants underpin the coupling of cell growth with cell division. In contrast, what determines the overall pattern of how cell size is distributed within a population of wild type or mutant cells has received little attention. Knowing how cell size varies around a characteristic pattern could shed light on the processes that generate such a pattern and provide a criterion to identify its genetic basis. Here, we show that cell size values of wild type Saccharomyces cerevisiae cells fit a gamma distribution, in haploid and diploid cells, and under different growth conditions. To identify genes that influence this pattern, we analyzed the cell size distributions of all single-gene deletion strains in Saccharomyces cerevisiae. We found that yeast strains which deviate the most from the gamma distribution are enriched for those lacking gene products functioning in gene expression, especially those in transcription or transcription-linked processes. We also show that cell size is increased in mutants carrying altered activity substitutions in Rpo21p/Rpb1, the largest subunit of RNA polymerase II (Pol II). Lastly, the size distribution of cells carrying extreme altered activity Pol II substitutions deviated from the expected gamma distribution. Our results are consistent with the idea that genetic defects in widely acting transcription factors or Pol II itself compromise both cell size homeostasis and how the size of individual cells is distributed in a population.
引用
收藏
页码:239 / 250
页数:12
相关论文
共 77 条
  • [1] CELL GROWTH AND DIVISION .4. DETERMINATION OF VOLUME GROWTH RATE AND DIVISION PROBABILITY
    ANDERSON, EC
    BELL, GI
    PETERSEN, DF
    TOBEY, RA
    [J]. BIOPHYSICAL JOURNAL, 1969, 9 (02) : 246 - &
  • [2] ASYMPTOTIC THEORY OF CERTAIN GOODNESS OF FIT CRITERIA BASED ON STOCHASTIC PROCESSES
    ANDERSON, TW
    DARLING, DA
    [J]. ANNALS OF MATHEMATICAL STATISTICS, 1952, 23 (02): : 193 - 212
  • [3] [Anonymous], 1981, MOL CELLULAR BIOL YE
  • [4] Yeast DNA repair proteins Rad6 and Rad18 form a heterodimer that has ubiquitin conjugating, DNA binding, and ATP hydrolytic activities
    Bailly, V
    Lauder, S
    Prakash, S
    Prakash, L
    [J]. JOURNAL OF BIOLOGICAL CHEMISTRY, 1997, 272 (37) : 23360 - 23365
  • [5] YeastMine-an integrated data warehouse for Saccharomyces cerevisiae data as a multipurpose tool-kit
    Balakrishnan, Rama
    Park, Julie
    Karra, Kalpana
    Hitz, Benjamin C.
    Binkley, Gail
    Hong, Eurie L.
    Sullivan, Julie
    Micklem, Gos
    Cherry, J. Michael
    [J]. DATABASE-THE JOURNAL OF BIOLOGICAL DATABASES AND CURATION, 2012,
  • [6] Identification of pathways regulating cell size and cell-cycle progression by RNAi
    Björklund, M
    Taipale, M
    Varjosalo, M
    Saharinen, J
    Lahdenperä, J
    Taipale, J
    [J]. NATURE, 2006, 439 (7079) : 1009 - 1013
  • [7] Roles of the RAM signaling network in cell cycle progression in Saccharomyces cerevisiae
    Bogomolnaya, Lydia M.
    Pathak, Ritu
    Guo, Jinbai
    Polymenis, Michael
    [J]. CURRENT GENETICS, 2006, 49 (06) : 384 - 392
  • [8] From Structure to Systems: High-Resolution, Quantitative Genetic Analysis of RNA Polymerase II
    Braberg, Hannes
    Jin, Huiyan
    Moehle, Erica A.
    Chan, Yujia A.
    Wang, Shuyi
    Shales, Michael
    Benschop, Joris J.
    Morris, John H.
    Qiu, Chenxi
    Hu, Fuqu
    Tang, Leung K.
    Fraser, James S.
    Holstege, Frank C. P.
    Hieter, Philip
    Guthrie, Christine
    Kaplan, Craig D.
    Krogan, Nevan J.
    [J]. CELL, 2013, 154 (04) : 775 - 788
  • [9] Brachmann CB, 1998, YEAST, V14, P115
  • [10] Stochastic protein expression in individual cells at the single molecule level
    Cai, L
    Friedman, N
    Xie, XS
    [J]. NATURE, 2006, 440 (7082) : 358 - 362