Glycolysis related gene expression signature in predicting prognosis of laryngeal squamous cell carcinoma

被引:5
|
作者
Lau, Hui-Ching [1 ,2 ]
Shen, Yujie [1 ,2 ]
Huang, Qiang [1 ,2 ]
Huang, Hui-Ying [1 ,2 ]
Zhou, Liang [1 ,2 ]
机构
[1] Fudan Univ, Eye & ENT Hosp, Dept Otorhinolaryngol, Shanghai, Peoples R China
[2] Shanghai Key Clin Disciplines Otorhinolaryngol, Shanghai, Peoples R China
基金
中国国家自然科学基金;
关键词
Laryngeal squamous cell carcinoma; TCGA; GEO; prognosis; gene signature; CANCER; HEAD; METABOLISM; SURVIVAL; DATABASE; GENDER; PLOD2;
D O I
10.1080/21655979.2021.1980177
中图分类号
Q81 [生物工程学(生物技术)]; Q93 [微生物学];
学科分类号
071005 ; 0836 ; 090102 ; 100705 ;
摘要
Researches have suggested that aerobic glycolysis can reflect the development and progression of most carcinomas. We aimed to investigate whether glycolysis-related genes (GRGs) are associated with overall survival in laryngeal squamous cell carcinoma (LSCC). Here, we identified differentially expressed GRGs in TCGA dataset and microarray sample of GSE27020 from GEO database. A set of two glycolytic gene signatures, including DDIT4 and PLOD2 was screened through Cox and Lasso regression. The risk score was calculated using the gene expression of the two GRGs. The high-risk group presented a poor prognosis through Kaplan-Meier method. The ROC curve indicated good prediction performance in survival based on the validation of four cohorts. Univariate and multivariate Cox regression analyses suggested that two-gene signature could be an independent risk factor in LSCC. A total of 17 LSCC patients were enrolled to clarify the genetic expression through using reverse transcription-polymerase chain reaction (RT-PCR). A visualized nomogram was then constructed to predict 1-, 3-, and 5-year overall survival. Taken together, two novel glycolytic gene signatures were discovered and validated, providing a potential therapeutic and overall survival (OS)-prediction biomarker for LSCC.
引用
收藏
页码:8738 / 8752
页数:15
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