Glycolysis related gene expression signature in predicting prognosis of laryngeal squamous cell carcinoma

被引:5
作者
Lau, Hui-Ching [1 ,2 ]
Shen, Yujie [1 ,2 ]
Huang, Qiang [1 ,2 ]
Huang, Hui-Ying [1 ,2 ]
Zhou, Liang [1 ,2 ]
机构
[1] Fudan Univ, Eye & ENT Hosp, Dept Otorhinolaryngol, Shanghai, Peoples R China
[2] Shanghai Key Clin Disciplines Otorhinolaryngol, Shanghai, Peoples R China
基金
中国国家自然科学基金;
关键词
Laryngeal squamous cell carcinoma; TCGA; GEO; prognosis; gene signature; CANCER; HEAD; METABOLISM; SURVIVAL; DATABASE; GENDER; PLOD2;
D O I
10.1080/21655979.2021.1980177
中图分类号
Q81 [生物工程学(生物技术)]; Q93 [微生物学];
学科分类号
071005 ; 0836 ; 090102 ; 100705 ;
摘要
Researches have suggested that aerobic glycolysis can reflect the development and progression of most carcinomas. We aimed to investigate whether glycolysis-related genes (GRGs) are associated with overall survival in laryngeal squamous cell carcinoma (LSCC). Here, we identified differentially expressed GRGs in TCGA dataset and microarray sample of GSE27020 from GEO database. A set of two glycolytic gene signatures, including DDIT4 and PLOD2 was screened through Cox and Lasso regression. The risk score was calculated using the gene expression of the two GRGs. The high-risk group presented a poor prognosis through Kaplan-Meier method. The ROC curve indicated good prediction performance in survival based on the validation of four cohorts. Univariate and multivariate Cox regression analyses suggested that two-gene signature could be an independent risk factor in LSCC. A total of 17 LSCC patients were enrolled to clarify the genetic expression through using reverse transcription-polymerase chain reaction (RT-PCR). A visualized nomogram was then constructed to predict 1-, 3-, and 5-year overall survival. Taken together, two novel glycolytic gene signatures were discovered and validated, providing a potential therapeutic and overall survival (OS)-prediction biomarker for LSCC.
引用
收藏
页码:8738 / 8752
页数:15
相关论文
共 50 条
  • [21] Development and Validation of Autophagy-Related Gene Signature and Nomogram for Predicting Survival in Oral Squamous Cell Carcinoma
    Hou, Chen
    Cai, Hongshi
    Zhu, Yue
    Huang, Shuojin
    Song, Fan
    Hou, Jinsong
    FRONTIERS IN ONCOLOGY, 2020, 10
  • [22] Protein expression analysis for predicting recurrent laryngeal squamous cell carcinoma
    Thanasan, Siwaporn
    Ruangritchankul, Komkrit
    Kitkumthorn, Nakarin
    Keelawat, Somboon
    Mahattanasakul, Patnarin
    BIOMEDICAL REPORTS, 2024, 20 (01)
  • [23] Identification of a glycolysis-related gene signature associated with clinical outcome for patients with lung squamous cell carcinoma
    Xu, Ziming
    Zhang, Shiwei
    Nian, Fulai
    Xu, Shangyu
    CANCER MEDICINE, 2021, 10 (12): : 4017 - 4029
  • [24] The effect of a novel glycolysis-related gene signature on progression, prognosis and immune microenvironment of renal cell carcinoma
    Xu, Fangshi
    Guan, Yibing
    Xue, Li
    Huang, Shanlong
    Gao, Ke
    Yang, Zhen
    Chong, Tie
    BMC CANCER, 2020, 20 (01)
  • [25] Development and validation of a novel ferroptosis-related gene signature for predicting prognosis and immune microenvironment in head and neck squamous cell carcinoma
    He, Feinan
    Chen, Zhigang
    Deng, Wenting
    Zhan, Ting
    Huang, Xiaotong
    Zheng, Yiqing
    Yang, Haidi
    INTERNATIONAL IMMUNOPHARMACOLOGY, 2021, 98
  • [26] A six-gene expression signature related to angiolymphatic invasion is associated with poor survival in laryngeal squamous cell carcinoma
    Metzger, Karl
    Moratin, Julius
    Freier, Kolja
    Hoffmann, Juergen
    Zaoui, Karim
    Plath, Michaela
    Stoegbauer, Fabian
    Freudlsperger, Christian
    Hess, Jochen
    Horn, Dominik
    EUROPEAN ARCHIVES OF OTO-RHINO-LARYNGOLOGY, 2021, 278 (04) : 1199 - 1207
  • [27] Discovery and Verification of an Immune-Related Gene Pairs Signature for Predicting Prognosis in Head and Neck Squamous Cell Carcinoma
    He, Jiqiang
    Fang, Xinqi
    Han, Mingming
    FRONTIERS IN GENETICS, 2021, 12
  • [28] A Novel Signature for Predicting Prognosis of Smoking-Related Squamous Cell Carcinoma
    Chen, Chang
    Cheng, Xiaoqing
    Li, Shuyan
    Chen, Huanghui
    Cui, Mengjing
    Bian, Linlin
    Jin, Hui
    FRONTIERS IN GENETICS, 2021, 12
  • [29] A combined gene signature model for predicting radiotherapy response and relapse-free survival in laryngeal squamous cell carcinoma
    Gong, Shiqi
    Yang, Liyun
    Xu, Meng
    Xiang, Mingliang
    Lang, Juntian
    Zhang, Hao
    Shan, Yamin
    CANCER CELL INTERNATIONAL, 2025, 25 (01)
  • [30] Construction of a Ferroptosis-Related Gene Signature for Head and Neck Squamous Cell Carcinoma Prognosis Prediction
    Li, Qun
    Jin, Yangli
    Shen, Zhisen
    Liu, Huigao
    Shen, Yi
    Wu, Zhenhua
    INTERNATIONAL JOURNAL OF GENERAL MEDICINE, 2021, 14 : 10117 - 10129