Exploring predictive QSAR models for hepatocyte toxicity of phenols using QTMS descriptors

被引:32
|
作者
Roy, Kunal [1 ]
Popelier, Paul L. A. [1 ]
机构
[1] Manchester Interdisciplinary Bioctr MIB, Manchester M1 7DN, Lancs, England
关键词
QTMS; toxicity; ab initio; phenols; QSAR; external validation; electron density; atoms in molecules; quantum chemical topology;
D O I
10.1016/j.bmcl.2008.03.035
中图分类号
R914 [药物化学];
学科分类号
100701 ;
摘要
We construct predictive QSAR models for hepatocyte toxicity data of phenols using Quantum Topological Molecular Similarity (QTMS) descriptors along with hydrophobicity (log P) as predictor variables. The QTMS descriptors were calculated at different levels of theory including AM1, HF/3-21G(d), HF/6-31G( d), B3LYP/6-31+G(d,p), B3LYP/6-311+ G(2d,p) and MP2/6-311+ G( 2d, p). The external predictability of the best models at the higher levels of theory is higher than that at the lower levels. Moreover, the best QTMS models are better in external predictability than the PLS models using pK(a) and Hammett sigma(+) along with logP. The current study implies the advantage of quantum chemically derived descriptors over physicochemical (experimentally derived or tabular) electronic descriptors in QSAR studies. (c) 2008 Elsevier Ltd. All rights reserved.
引用
收藏
页码:2604 / 2609
页数:6
相关论文
共 50 条
  • [41] QSAR Studies of Toxicity Towards Monocytes with (1,3-benzothiazol-2-yl) amino-9-(10H)-acridinone Derivatives Using Electronic Descriptors
    Chtita, Samir
    Larif, Majdouline
    Ghamali, Mounir
    Bouachrine, Mohammed
    Lakhlifi, Tahar
    ORBITAL-THE ELECTRONIC JOURNAL OF CHEMISTRY, 2015, 7 (02): : 176 - 184
  • [42] Modification of polychlorinated phenols and evaluation of their toxicity, biodegradation and bioconcentration using three-dimensional quantitative structure-activity relationship models
    Tong, Lidan
    Guo, Lixin
    Lv, Xiaojun
    Li, Yu
    JOURNAL OF MOLECULAR GRAPHICS & MODELLING, 2017, 71 : 1 - 12
  • [43] Comparing Performances of Predictive Models of Toxicity after Radiotherapy for Breast Cancer Using Different Machine Learning Approaches
    Ubeira-Gabellini, Maria Giulia
    Mori, Martina
    Palazzo, Gabriele
    Cicchetti, Alessandro
    Mangili, Paola
    Pavarini, Maddalena
    Rancati, Tiziana
    Fodor, Andrei
    del Vecchio, Antonella
    Di Muzio, Nadia Gisella
    Fiorino, Claudio
    CANCERS, 2024, 16 (05)
  • [44] Development of linear and nonlinear predictive QSAR models and their external validation using molecular similarity principle for anti-HIV indolyl aryl sulfones
    Roy, Kunal
    Mandal, Asim Sattwa
    JOURNAL OF ENZYME INHIBITION AND MEDICINAL CHEMISTRY, 2008, 23 (06) : 980 - 995
  • [45] In silico development, validation and comparison of predictive QSAR models for lipid peroxidation inhibitory activity of cinnamic acid and caffeic acid derivatives using multiple chemometric and cheminformatics tools
    Mitra, Indrani
    Saha, Achintya
    Roy, Kunal
    JOURNAL OF MOLECULAR MODELING, 2012, 18 (08) : 3951 - 3967
  • [46] In silico development, validation and comparison of predictive QSAR models for lipid peroxidation inhibitory activity of cinnamic acid and caffeic acid derivatives using multiple chemometric and cheminformatics tools
    Indrani Mitra
    Achintya Saha
    Kunal Roy
    Journal of Molecular Modeling, 2012, 18 : 3951 - 3967
  • [47] Exploring the Relationship of Drug-Induced Neutrophil Immaturity & Haematological Toxicity to Drug Chemistry Using Quantitative Structure-Activity Models
    Delieu, J. M.
    Horobin, R. W.
    Duguid, J. K.
    MEDICINAL CHEMISTRY, 2009, 5 (01) : 7 - 14
  • [48] Estimation of Ionic Liquids Toxicity against Leukemia Rat Cell Line IPC-81 based on the Empirical-like Models using Intuitive and Explainable Fingerprint Descriptors
    Wu, Ting
    Li, Wanli
    Chen, Mengyao
    Zhou, Yanmei
    Zhang, Qingyou
    MOLECULAR INFORMATICS, 2020, 39 (10)
  • [49] Insights into nanoparticle toxicity against aquatic organisms using multivariate regression, read-across, and ML algorithms: Predictive models for Daphnia magna and Danio rerio
    Roy, Joyita
    Roy, Kunal
    AQUATIC TOXICOLOGY, 2024, 276
  • [50] QSTR with extended topochemical atom (ETA) indices. 15. Development of predictive models for toxicity of organic chemicals against fathead minnow using second- generation ETA indices
    Roy, K.
    Das, R. Narayan
    SAR AND QSAR IN ENVIRONMENTAL RESEARCH, 2012, 23 (1-2) : 125 - 140