共 121 条
Long Non-Coding RNAs as Endogenous Target Mimics and Exploration of Their Role in Low Nutrient Stress Tolerance in Plants
被引:33
作者:

Borah, Priyanka
论文数: 0 引用数: 0
h-index: 0
机构:
Indian Agr Res Inst, Div Plant Physiol, Mineral Nutr Lab, ICAR, New Delhi 110012, India
Jamia Millia Islamia, Dept Biosci, New Delhi 110025, India Indian Agr Res Inst, Div Plant Physiol, Mineral Nutr Lab, ICAR, New Delhi 110012, India

Das, Antara
论文数: 0 引用数: 0
h-index: 0
机构:
Natl Res Ctr Plant Biotechnol, ICAR, New Delhi 110012, India Indian Agr Res Inst, Div Plant Physiol, Mineral Nutr Lab, ICAR, New Delhi 110012, India

Milner, Matthew J.
论文数: 0 引用数: 0
h-index: 0
机构:
NIAB, John Bingham Lab, Huntingdon Rd, Cambridge CB30LE, England Indian Agr Res Inst, Div Plant Physiol, Mineral Nutr Lab, ICAR, New Delhi 110012, India

Ali, Arif
论文数: 0 引用数: 0
h-index: 0
机构:
Jamia Millia Islamia, Dept Biosci, New Delhi 110025, India Indian Agr Res Inst, Div Plant Physiol, Mineral Nutr Lab, ICAR, New Delhi 110012, India

Bentley, Alison R.
论文数: 0 引用数: 0
h-index: 0
机构:
NIAB, John Bingham Lab, Huntingdon Rd, Cambridge CB30LE, England Indian Agr Res Inst, Div Plant Physiol, Mineral Nutr Lab, ICAR, New Delhi 110012, India

Pandey, Renu
论文数: 0 引用数: 0
h-index: 0
机构:
Indian Agr Res Inst, Div Plant Physiol, Mineral Nutr Lab, ICAR, New Delhi 110012, India Indian Agr Res Inst, Div Plant Physiol, Mineral Nutr Lab, ICAR, New Delhi 110012, India
机构:
[1] Indian Agr Res Inst, Div Plant Physiol, Mineral Nutr Lab, ICAR, New Delhi 110012, India
[2] Jamia Millia Islamia, Dept Biosci, New Delhi 110025, India
[3] Natl Res Ctr Plant Biotechnol, ICAR, New Delhi 110012, India
[4] NIAB, John Bingham Lab, Huntingdon Rd, Cambridge CB30LE, England
来源:
GENES
|
2018年
/
9卷
/
09期
基金:
英国生物技术与生命科学研究理事会;
关键词:
long non-coding RNAs;
endogenous target mimicry;
microRNA;
nitrogen and phosphorus deprivation;
NITROGEN USE EFFICIENCY;
PHOSPHATE STARVATION;
ARABIDOPSIS-THALIANA;
MEDICAGO-TRUNCATULA;
RESPONSIVE MIRNAS;
SIGNALING PATHWAY;
MICRORNA ACTIVITY;
X-CHROMOSOME;
ROOT-SYSTEM;
XIST RNA;
D O I:
10.3390/genes9090459
中图分类号:
Q3 [遗传学];
学科分类号:
071007 ;
090102 ;
摘要:
Long non-coding RNA (lncRNA) research in plants has recently gained momentum taking cues from studies in animals systems. The availability of next-generation sequencing has enabled genome-wide identification of lncRNA in several plant species. Some lncRNAs are inhibitors of microRNA expression and have a function known as target mimicry with the sequestered transcript known as an endogenous target mimic (eTM). The lncRNAs identified to date show diverse mechanisms of gene regulation, most of which remain poorly understood. In this review, we discuss the role of identified putative lncRNAs that may act as eTMs for nutrient-responsive microRNAs (miRNAs) in plants. If functionally validated, these putative lncRNAs would enhance current understanding of the role of lncRNAs in nutrient homeostasis in plants.
引用
收藏
页数:17
相关论文
共 121 条
- [1] Identification of quantitative trait loci for nitrogen use efficiency in maize[J]. MOLECULAR BREEDING, 1999, 5 (02) : 187 - 195Agrama, HAS论文数: 0 引用数: 0 h-index: 0机构: Agr Res Ctr, Appl Mol Genet Lab, Alexandria 21321, EgyptZakaria, AG论文数: 0 引用数: 0 h-index: 0机构: Agr Res Ctr, Appl Mol Genet Lab, Alexandria 21321, EgyptSaid, FB论文数: 0 引用数: 0 h-index: 0机构: Agr Res Ctr, Appl Mol Genet Lab, Alexandria 21321, EgyptTuinstra, M论文数: 0 引用数: 0 h-index: 0机构: Agr Res Ctr, Appl Mol Genet Lab, Alexandria 21321, Egypt
- [2] Systems approach identifies TGA1 and TGA4 transcription factors as important regulatory components of the nitrate response of Arabidopsis thaliana roots[J]. PLANT JOURNAL, 2014, 80 (01) : 1 - 13Alvarez, Jose M.论文数: 0 引用数: 0 h-index: 0机构: Pontificia Univ Catolica Chile, Fac Ciencias Biol, FONDAP Ctr Genome Regulat, Dept Mol Genet & Microbiol, Santiago 8331150, Chile Pontificia Univ Catolica Chile, Fac Ciencias Biol, Millennium Nucleus Ctr Plant Funct Gen, Dept Mol Genet & Microbiol, Santiago 8331150, Chile Pontificia Univ Catolica Chile, Fac Ciencias Biol, FONDAP Ctr Genome Regulat, Dept Mol Genet & Microbiol, Santiago 8331150, ChileRiveras, Eleodoro论文数: 0 引用数: 0 h-index: 0机构: Pontificia Univ Catolica Chile, Fac Ciencias Biol, FONDAP Ctr Genome Regulat, Dept Mol Genet & Microbiol, Santiago 8331150, Chile Pontificia Univ Catolica Chile, Fac Ciencias Biol, Millennium Nucleus Ctr Plant Funct Gen, Dept Mol Genet & Microbiol, Santiago 8331150, Chile Pontificia Univ Catolica Chile, Fac Ciencias Biol, FONDAP Ctr Genome Regulat, Dept Mol Genet & Microbiol, Santiago 8331150, ChileVidal, Elena A.论文数: 0 引用数: 0 h-index: 0机构: Pontificia Univ Catolica Chile, Fac Ciencias Biol, FONDAP Ctr Genome Regulat, Dept Mol Genet & Microbiol, Santiago 8331150, Chile Pontificia Univ Catolica Chile, Fac Ciencias Biol, Millennium Nucleus Ctr Plant Funct Gen, Dept Mol Genet & Microbiol, Santiago 8331150, Chile Pontificia Univ Catolica Chile, Fac Ciencias Biol, FONDAP Ctr Genome Regulat, Dept Mol Genet & Microbiol, Santiago 8331150, ChileGras, Diana E.论文数: 0 引用数: 0 h-index: 0机构: Pontificia Univ Catolica Chile, Fac Ciencias Biol, FONDAP Ctr Genome Regulat, Dept Mol Genet & Microbiol, Santiago 8331150, Chile Pontificia Univ Catolica Chile, Fac Ciencias Biol, Millennium Nucleus Ctr Plant Funct Gen, Dept Mol Genet & Microbiol, Santiago 8331150, Chile Pontificia Univ Catolica Chile, Fac Ciencias Biol, FONDAP Ctr Genome Regulat, Dept Mol Genet & Microbiol, Santiago 8331150, ChileContreras-Lopez, Orlando论文数: 0 引用数: 0 h-index: 0机构: Pontificia Univ Catolica Chile, Fac Ciencias Biol, FONDAP Ctr Genome Regulat, Dept Mol Genet & Microbiol, Santiago 8331150, Chile Pontificia Univ Catolica Chile, Fac Ciencias Biol, Millennium Nucleus Ctr Plant Funct Gen, Dept Mol Genet & Microbiol, Santiago 8331150, Chile Pontificia Univ Catolica Chile, Fac Ciencias Biol, FONDAP Ctr Genome Regulat, Dept Mol Genet & Microbiol, Santiago 8331150, ChileTamayo, Karem P.论文数: 0 引用数: 0 h-index: 0机构: Pontificia Univ Catolica Chile, Fac Ciencias Biol, FONDAP Ctr Genome Regulat, Dept Mol Genet & Microbiol, Santiago 8331150, Chile Pontificia Univ Catolica Chile, Fac Ciencias Biol, Millennium Nucleus Ctr Plant Funct Gen, Dept Mol Genet & Microbiol, Santiago 8331150, Chile Pontificia Univ Catolica Chile, Fac Ciencias Biol, FONDAP Ctr Genome Regulat, Dept Mol Genet & Microbiol, Santiago 8331150, ChileAceituno, Felipe论文数: 0 引用数: 0 h-index: 0机构: Pontificia Univ Catolica Chile, Fac Ciencias Biol, FONDAP Ctr Genome Regulat, Dept Mol Genet & Microbiol, Santiago 8331150, Chile Pontificia Univ Catolica Chile, Fac Ciencias Biol, Millennium Nucleus Ctr Plant Funct Gen, Dept Mol Genet & Microbiol, Santiago 8331150, Chile Pontificia Univ Catolica Chile, Fac Ciencias Biol, FONDAP Ctr Genome Regulat, Dept Mol Genet & Microbiol, Santiago 8331150, ChileGomez, Isabel论文数: 0 引用数: 0 h-index: 0机构: Pontificia Univ Catolica Chile, Fac Ciencias Biol, Millennium Nucleus Ctr Plant Funct Gen, Dept Mol Genet & Microbiol, Santiago 8331150, Chile Pontificia Univ Catolica Chile, Fac Ciencias Biol, FONDAP Ctr Genome Regulat, Dept Mol Genet & Microbiol, Santiago 8331150, ChileRuffel, Sandrine论文数: 0 引用数: 0 h-index: 0机构: INRA, CNRS, SupAgro UM2,AgroM, Inst Biol Integrat Plantes,Unite Mixte Rech 5004, F-34060 Montpellier 2, France Pontificia Univ Catolica Chile, Fac Ciencias Biol, FONDAP Ctr Genome Regulat, Dept Mol Genet & Microbiol, Santiago 8331150, ChileLejay, Laurence论文数: 0 引用数: 0 h-index: 0机构: INRA, CNRS, SupAgro UM2,AgroM, Inst Biol Integrat Plantes,Unite Mixte Rech 5004, F-34060 Montpellier 2, France Pontificia Univ Catolica Chile, Fac Ciencias Biol, FONDAP Ctr Genome Regulat, Dept Mol Genet & Microbiol, Santiago 8331150, ChileJordana, Xavier论文数: 0 引用数: 0 h-index: 0机构: Pontificia Univ Catolica Chile, Fac Ciencias Biol, Millennium Nucleus Ctr Plant Funct Gen, Dept Mol Genet & Microbiol, Santiago 8331150, Chile Pontificia Univ Catolica Chile, Fac Ciencias Biol, FONDAP Ctr Genome Regulat, Dept Mol Genet & Microbiol, Santiago 8331150, ChileGutierrez, Rodrigo A.论文数: 0 引用数: 0 h-index: 0机构: Pontificia Univ Catolica Chile, Fac Ciencias Biol, FONDAP Ctr Genome Regulat, Dept Mol Genet & Microbiol, Santiago 8331150, Chile Pontificia Univ Catolica Chile, Fac Ciencias Biol, Millennium Nucleus Ctr Plant Funct Gen, Dept Mol Genet & Microbiol, Santiago 8331150, Chile Pontificia Univ Catolica Chile, Fac Ciencias Biol, FONDAP Ctr Genome Regulat, Dept Mol Genet & Microbiol, Santiago 8331150, Chile
- [3] Diversifying microRNA sequence and function[J]. NATURE REVIEWS MOLECULAR CELL BIOLOGY, 2013, 14 (08) : 475 - 488Ameres, Stefan L.论文数: 0 引用数: 0 h-index: 0机构: Acad Sci IMBA, Inst Mol Biotechnol Austrian, A-1030 Vienna, Austria Acad Sci IMBA, Inst Mol Biotechnol Austrian, A-1030 Vienna, AustriaZamore, Phillip D.论文数: 0 引用数: 0 h-index: 0机构: Howard Hughes Med Inst, Worcester, MA 01605 USA Univ Massachusetts, Sch Med, Worcester, MA 01605 USA Acad Sci IMBA, Inst Mol Biotechnol Austrian, A-1030 Vienna, Austria
- [4] Long Noncoding RNA Modulates Alternative Splicing Regulators in Arabidopsis[J]. DEVELOPMENTAL CELL, 2014, 30 (02) : 166 - 176Bardou, Florian论文数: 0 引用数: 0 h-index: 0机构: CNRS, Inst Sci Vegetal, Saclay Plant Sci, F-91198 Gif Sur Yvette, France CNRS, Inst Sci Vegetal, Saclay Plant Sci, F-91198 Gif Sur Yvette, FranceAriel, Federico论文数: 0 引用数: 0 h-index: 0机构: CNRS, Inst Sci Vegetal, Saclay Plant Sci, F-91198 Gif Sur Yvette, France CNRS, Inst Sci Vegetal, Saclay Plant Sci, F-91198 Gif Sur Yvette, FranceSimpson, Craig G.论文数: 0 引用数: 0 h-index: 0机构: James Hutton Inst, Dundee DD2 5DA, Scotland CNRS, Inst Sci Vegetal, Saclay Plant Sci, F-91198 Gif Sur Yvette, FranceRomero-Barrios, Natali论文数: 0 引用数: 0 h-index: 0机构: CNRS, Inst Sci Vegetal, Saclay Plant Sci, F-91198 Gif Sur Yvette, France CNRS, Inst Sci Vegetal, Saclay Plant Sci, F-91198 Gif Sur Yvette, FranceLaporte, Philippe论文数: 0 引用数: 0 h-index: 0机构: CNRS, Inst Sci Vegetal, Saclay Plant Sci, F-91198 Gif Sur Yvette, France CNRS, Inst Sci Vegetal, Saclay Plant Sci, F-91198 Gif Sur Yvette, FranceBalzergue, Sandrine论文数: 0 引用数: 0 h-index: 0机构: Univ Evry Val Essonne, ERL CNRS 8196, UMR INRA 1165, URGV, F-91000 Evry, France CNRS, Inst Sci Vegetal, Saclay Plant Sci, F-91198 Gif Sur Yvette, FranceBrown, John W. S.论文数: 0 引用数: 0 h-index: 0机构: James Hutton Inst, Dundee DD2 5DA, Scotland Univ Dundee, James Hutton Inst, Plant Sci Div, Coll Life Sci, Dundee DD2 5DA, Scotland CNRS, Inst Sci Vegetal, Saclay Plant Sci, F-91198 Gif Sur Yvette, FranceCrespi, Martin论文数: 0 引用数: 0 h-index: 0机构: CNRS, Inst Sci Vegetal, Saclay Plant Sci, F-91198 Gif Sur Yvette, France CNRS, Inst Sci Vegetal, Saclay Plant Sci, F-91198 Gif Sur Yvette, France
- [5] PHO2, microRNA399, and PHR1 define a phosphate-signaling pathway in plants[J]. PLANT PHYSIOLOGY, 2006, 141 (03) : 988 - 999Bari, Rajendra论文数: 0 引用数: 0 h-index: 0机构: Max Planck Inst Mol Plant Physiol, D-14476 Potsdam, Germany Max Planck Inst Mol Plant Physiol, D-14476 Potsdam, GermanyPant, Bikram Datt论文数: 0 引用数: 0 h-index: 0机构: Max Planck Inst Mol Plant Physiol, D-14476 Potsdam, Germany Max Planck Inst Mol Plant Physiol, D-14476 Potsdam, GermanyStitt, Mark论文数: 0 引用数: 0 h-index: 0机构: Max Planck Inst Mol Plant Physiol, D-14476 Potsdam, Germany Max Planck Inst Mol Plant Physiol, D-14476 Potsdam, GermanyScheible, Wolf-Ruediger论文数: 0 引用数: 0 h-index: 0机构: Max Planck Inst Mol Plant Physiol, D-14476 Potsdam, Germany Max Planck Inst Mol Plant Physiol, D-14476 Potsdam, Germany
- [6] RNA meets chromatin[J]. GENES & DEVELOPMENT, 2005, 19 (14) : 1635 - 1655Bernstein, E论文数: 0 引用数: 0 h-index: 0机构: Rockefeller Univ, Lab Chromatin Biol, New York, NY 10021 USA Rockefeller Univ, Lab Chromatin Biol, New York, NY 10021 USAAllis, CD论文数: 0 引用数: 0 h-index: 0机构: Rockefeller Univ, Lab Chromatin Biol, New York, NY 10021 USA Rockefeller Univ, Lab Chromatin Biol, New York, NY 10021 USA
- [7] TAPIR, a web server for the prediction of plant microRNA targets, including target mimics[J]. BIOINFORMATICS, 2010, 26 (12) : 1566 - 1568Bonnet, Eric论文数: 0 引用数: 0 h-index: 0机构: Univ Ghent, Dept Plant Syst Biol, B-9052 Ghent, Belgium Univ Ghent, Dept Mol Genet, B-9052 Ghent, Belgium Univ Ghent, Dept Plant Syst Biol, B-9052 Ghent, BelgiumHe, Ying论文数: 0 引用数: 0 h-index: 0机构: Univ Ghent, Dept Plant Syst Biol, B-9052 Ghent, Belgium Univ Ghent, Dept Mol Genet, B-9052 Ghent, Belgium Univ Ghent, Dept Plant Syst Biol, B-9052 Ghent, BelgiumBilliau, Kenny论文数: 0 引用数: 0 h-index: 0机构: Univ Ghent, Dept Plant Syst Biol, B-9052 Ghent, Belgium Univ Ghent, Dept Mol Genet, B-9052 Ghent, Belgium Univ Ghent, Dept Plant Syst Biol, B-9052 Ghent, BelgiumVan de Peer, Yves论文数: 0 引用数: 0 h-index: 0机构: Univ Ghent, Dept Plant Syst Biol, B-9052 Ghent, Belgium Univ Ghent, Dept Mol Genet, B-9052 Ghent, Belgium Univ Ghent, Dept Plant Syst Biol, B-9052 Ghent, Belgium
- [8] THE PRODUCT OF THE H19 GENE MAY FUNCTION AS AN RNA[J]. MOLECULAR AND CELLULAR BIOLOGY, 1990, 10 (01) : 28 - 36BRANNAN, CI论文数: 0 引用数: 0 h-index: 0机构: PRINCETON UNIV,HOWARD HUGHES MED INST,PRINCETON,NJ 08544DEES, EC论文数: 0 引用数: 0 h-index: 0机构: PRINCETON UNIV,HOWARD HUGHES MED INST,PRINCETON,NJ 08544INGRAM, RS论文数: 0 引用数: 0 h-index: 0机构: PRINCETON UNIV,HOWARD HUGHES MED INST,PRINCETON,NJ 08544TILGHMAN, SM论文数: 0 引用数: 0 h-index: 0机构: PRINCETON UNIV,HOWARD HUGHES MED INST,PRINCETON,NJ 08544
- [9] A GENE FROM THE REGION OF THE HUMAN X-INACTIVATION CENTER IS EXPRESSED EXCLUSIVELY FROM THE INACTIVE X-CHROMOSOME[J]. NATURE, 1991, 349 (6304) : 38 - 44BROWN, CJ论文数: 0 引用数: 0 h-index: 0机构: STANFORD UNIV,MED CTR,SCH MED,DEPT GENET,STANFORD,CA 94305BALLABIO, A论文数: 0 引用数: 0 h-index: 0机构: STANFORD UNIV,MED CTR,SCH MED,DEPT GENET,STANFORD,CA 94305RUPERT, JL论文数: 0 引用数: 0 h-index: 0机构: STANFORD UNIV,MED CTR,SCH MED,DEPT GENET,STANFORD,CA 94305LAFRENIERE, RG论文数: 0 引用数: 0 h-index: 0机构: STANFORD UNIV,MED CTR,SCH MED,DEPT GENET,STANFORD,CA 94305GROMPE, M论文数: 0 引用数: 0 h-index: 0机构: STANFORD UNIV,MED CTR,SCH MED,DEPT GENET,STANFORD,CA 94305TONLORENZI, R论文数: 0 引用数: 0 h-index: 0机构: STANFORD UNIV,MED CTR,SCH MED,DEPT GENET,STANFORD,CA 94305WILLARD, HF论文数: 0 引用数: 0 h-index: 0机构: STANFORD UNIV,MED CTR,SCH MED,DEPT GENET,STANFORD,CA 94305
- [10] The down-regulation of Mt4-like genes by phosphate fertilization occurs systemically and involves phosphate translocation to the shoots[J]. PLANT PHYSIOLOGY, 1999, 119 (01) : 241 - 248Burleigh, SH论文数: 0 引用数: 0 h-index: 0机构: Samuel Roberts Noble Fdn Inc, Div Plant Biol, Ardmore, OK 73402 USA Samuel Roberts Noble Fdn Inc, Div Plant Biol, Ardmore, OK 73402 USAHarrison, MJ论文数: 0 引用数: 0 h-index: 0机构: Samuel Roberts Noble Fdn Inc, Div Plant Biol, Ardmore, OK 73402 USA Samuel Roberts Noble Fdn Inc, Div Plant Biol, Ardmore, OK 73402 USA