Prediction of hot regions in protein-protein interaction based on the Gi statistics and cascade classifier

被引:0
|
作者
Tan, Bingqin [1 ]
Zhang, Xiaolong [1 ]
机构
[1] Wuhan Univ Sci & Technol, Sch Comp Sci & Technol, Hubei Key Lab Intelligent Informat Proc & Real Ti, Wuhan 430065, Peoples R China
来源
2014 IEEE INTERNATIONAL CONFERENCE ON BIOINFORMATICS AND BIOMEDICINE (BIBM) | 2014年
关键词
protein-protein interaction; hot region; Gi statistics; cascade classifier; Robatta; ORGANIZATION;
D O I
暂无
中图分类号
TP39 [计算机的应用];
学科分类号
081203 ; 0835 ;
摘要
There is an important relationship between the stability of protein complex and hot region. Research has shown that in protein-protein interaction (PPI), residues are denser around the hot region. Therefore, this paper proposed an algorithm based on Gi statistics, regional division rule and regional amplification principle to form residue dense region (RDR); Then, according to the results of cascade classifier composed of Naive Bayes and Back-Propagation (BP) neural network classifier, non-hotspot residues in RDRs were removed; At length, we used binding free energy change value calculated from Robetta Server to modify predicted hot regions. The experimental results showd that the proposed method can effectively improve the prediction accuracy on hot regions.
引用
收藏
页数:8
相关论文
共 50 条
  • [31] Algorithmic approaches to protein-protein interaction site prediction
    Aumentado-Armstrong, Tristan T.
    Istrate, Bogdan
    Murgita, Robert A.
    ALGORITHMS FOR MOLECULAR BIOLOGY, 2015, 10
  • [32] Protein-protein interaction and site prediction using transfer learning
    Liu, Tuoyu
    Gao, Han
    Ren, Xiaopu
    Xu, Guoshun
    Liu, Bo
    Wu, Ningfeng
    Luo, Huiying
    Wang, Yuan
    Tu, Tao
    Yao, Bin
    Guan, Feifei
    Teng, Yue
    Huang, Huoqing
    Tian, Jian
    BRIEFINGS IN BIOINFORMATICS, 2023, 24 (06)
  • [33] Protein-Protein Interaction Prediction via Graph Signal Processing
    Colonnese, Stefania
    Petti, Manuela
    Farina, Lorenzo
    Scarano, Gaetano
    Cuomo, Francesca
    IEEE ACCESS, 2021, 9 : 142681 - 142692
  • [34] Computational Prediction of Protein-Protein Interaction Networks: Algorithms and Resources
    Zahiri, Javad
    Bozorgmehr, Joseph Hannon
    Masoudi-Nejad, Ali
    CURRENT GENOMICS, 2013, 14 (06) : 397 - 414
  • [35] Prediction of protein-protein interaction sites using patch analysis
    Jones, S
    Thornton, JM
    JOURNAL OF MOLECULAR BIOLOGY, 1997, 272 (01) : 133 - 143
  • [36] Normalized L3-based link prediction in protein-protein interaction networks
    Yuen, Ho Yin
    Jansson, Jesper
    BMC BIOINFORMATICS, 2023, 24 (01)
  • [37] Some Remarks on Prediction of Protein-Protein Interaction with Machine Learning
    Zhang, Shao-Wu
    Wei, Ze-Gang
    MEDICINAL CHEMISTRY, 2015, 11 (03) : 254 - 264
  • [38] Prediction of Protein-Protein Interaction Types Using the Decision Templates
    Chen, Wei
    Zhang, Shao-Wu
    Cheng, Yong-Mei
    2009 FOURTH INTERNATIONAL CONFERENCE ON BIO-INSPIRED COMPUTING: THEORIES AND APPLICATIONS, PROCEEDINGS, 2009, : 93 - 98
  • [39] AutoPPI: An Ensemble of Deep Autoencoders for Protein-Protein Interaction Prediction
    Czibula, Gabriela
    Albu, Alexandra-Ioana
    Bocicor, Maria Iuliana
    Chira, Camelia
    ENTROPY, 2021, 23 (06)
  • [40] Protein-Protein Interaction Interface Residue Pair Prediction Based on Deep Learning Architecture
    Zhao, Zhenni
    Gong, Xinqi
    IEEE-ACM TRANSACTIONS ON COMPUTATIONAL BIOLOGY AND BIOINFORMATICS, 2019, 16 (05) : 1753 - 1759