Prediction of hot regions in protein-protein interaction based on the Gi statistics and cascade classifier

被引:0
|
作者
Tan, Bingqin [1 ]
Zhang, Xiaolong [1 ]
机构
[1] Wuhan Univ Sci & Technol, Sch Comp Sci & Technol, Hubei Key Lab Intelligent Informat Proc & Real Ti, Wuhan 430065, Peoples R China
来源
2014 IEEE INTERNATIONAL CONFERENCE ON BIOINFORMATICS AND BIOMEDICINE (BIBM) | 2014年
关键词
protein-protein interaction; hot region; Gi statistics; cascade classifier; Robatta; ORGANIZATION;
D O I
暂无
中图分类号
TP39 [计算机的应用];
学科分类号
081203 ; 0835 ;
摘要
There is an important relationship between the stability of protein complex and hot region. Research has shown that in protein-protein interaction (PPI), residues are denser around the hot region. Therefore, this paper proposed an algorithm based on Gi statistics, regional division rule and regional amplification principle to form residue dense region (RDR); Then, according to the results of cascade classifier composed of Naive Bayes and Back-Propagation (BP) neural network classifier, non-hotspot residues in RDRs were removed; At length, we used binding free energy change value calculated from Robetta Server to modify predicted hot regions. The experimental results showd that the proposed method can effectively improve the prediction accuracy on hot regions.
引用
收藏
页数:8
相关论文
共 50 条
  • [21] Using Topology Information for Protein-Protein Interaction Prediction
    Birlutiu, Adriana
    Heskes, Tom
    PATTERN RECOGNITION IN BIOINFORMATICS, PRIB 2014, 2014, 8626 : 10 - 22
  • [22] Hot spot prediction in protein-protein interactions by an ensemble system
    Liu, Quanya
    Chen, Peng
    Wang, Bing
    Zhang, Jun
    Li, Jinyan
    BMC SYSTEMS BIOLOGY, 2018, 12
  • [23] Deep learning frameworks for protein-protein interaction prediction
    Hu, Xiaotian
    Feng, Cong
    Ling, Tianyi
    Chen, Ming
    COMPUTATIONAL AND STRUCTURAL BIOTECHNOLOGY JOURNAL, 2022, 20 : 3223 - 3233
  • [24] Algorithmic approaches to protein-protein interaction site prediction
    Tristan T Aumentado-Armstrong
    Bogdan Istrate
    Robert A Murgita
    Algorithms for Molecular Biology, 10
  • [25] Better Link Prediction for Protein-Protein Interaction Networks
    Yuen, Ho Yin
    Jansson, Jesper
    2020 IEEE 20TH INTERNATIONAL CONFERENCE ON BIOINFORMATICS AND BIOENGINEERING (BIBE 2020), 2020, : 53 - 60
  • [26] Prediction of Combinatorial Protein-Protein Interaction Networks from Expression Data Using Statistics on Conditional Probability
    Fujiki, Takatoshi
    Inoue, Etsuko
    Yoshihiro, Takuya
    Nakagawa, Masaru
    KNOWLEDGE-BASED AND INTELLIGENT INFORMATION AND ENGINEERING SYSTEMS, PT III, 2010, 6278 : 509 - 518
  • [27] Pathway prediction in protein-protein interaction networks based on hierarchical clustering algorithm
    Wang, Shuqin
    Li, Yinzhu
    Liu, Peiyan
    Wei, Jinmao
    Journal of Bionanoscience, 2013, 7 (04): : 478 - 483
  • [28] Prediction of Human Genes' Regulatory Functions Based on Protein-protein Interaction Network
    Gao, Peng
    Wang, Qing-Ping
    Chen, Lei
    Huang, Tao
    PROTEIN AND PEPTIDE LETTERS, 2012, 19 (09) : 910 - 916
  • [29] Protein-Protein Interaction Prediction Model Based on ProtBert-BiGRU-Attention
    Gao, Qian
    Zhang, Chi
    Li, Ming
    Yu, Tianfei
    JOURNAL OF COMPUTATIONAL BIOLOGY, 2024, 31 (09) : 797 - 814
  • [30] TransDomain: A Transitive Domain-Based Method in Protein-Protein Interaction Prediction
    Tang, Yi-Tsung
    Kao, Hung-Yu
    BIOINFORMATICS RESEARCH AND APPLICATIONS, 2011, 6674 : 240 - 252