Chemical Space: Missing Pieces in Cheminformatics

被引:15
作者
Ekins, Sean [1 ,2 ,3 ,4 ]
Gupta, Rishi R. [5 ]
Gifford, Eric [5 ]
Bunin, Barry A. [2 ]
Waller, Chris L. [5 ]
机构
[1] Collaborat Chem, Jenkintown, PA 19046 USA
[2] Collaborat Drug Discovery, Burlingame, CA 94010 USA
[3] Univ Maryland, Dept Pharmaceut Sci, College Pk, MD 21201 USA
[4] Univ Med & Dent New Jersey, Robert Wood Johnson Med Sch, Dept Pharmacol, Piscataway, NJ 08854 USA
[5] Pfizer Global Res & Dev, Groton, CT 06340 USA
关键词
ADME/Tox; cheminformatics; open chemistry development kit; pharmacophores; QSAR; DATA VISUALIZATION; DRUG; TOOL; DESCRIPTORS; SELECTION; LIBRARY;
D O I
10.1007/s11095-010-0229-0
中图分类号
O6 [化学];
学科分类号
0703 ;
摘要
Cheminformatics is at a turning point, the pharmaceutical industry benefits from using the various methods developed over the last twenty years, but in our opinion we need to see greater development of novel approaches that non-experts can use. This will be achieved by more collaborations between software companies, academics and the evolving pharmaceutical industry. We suggest that cheminformatics should also be looking to other industries that use high performance computing technologies for inspiration. We describe the needs and opportunities which may benefit from the development of open cheminformatics technologies, mobile computing, the movement of software to the cloud and precompetitive initiatives.
引用
收藏
页码:2035 / 2039
页数:5
相关论文
共 44 条
  • [11] Evolving molecules using multi-objective optimization: applying to ADME/Tox
    Ekins, Sean
    Honeycutt, J. Dana
    Metz, James T.
    [J]. DRUG DISCOVERY TODAY, 2010, 15 (11-12) : 451 - 460
  • [12] A Turning Point For Blood-Brain Barrier Modeling
    Ekins, Sean
    Tropsha, Alexander
    [J]. PHARMACEUTICAL RESEARCH, 2009, 26 (05) : 1283 - 1284
  • [13] Recognition forces in ligand-protein complexes: Blending information from different sources
    Ermondi, Giuseppe
    Caron, Giulia
    [J]. BIOCHEMICAL PHARMACOLOGY, 2006, 72 (12) : 1633 - 1645
  • [14] Combinatorial library design using a multiobjective genetic algorithm
    Gillet, VJ
    Khatib, W
    Willett, P
    Fleming, PJ
    Green, DVS
    [J]. JOURNAL OF CHEMICAL INFORMATION AND COMPUTER SCIENCES, 2002, 42 (02): : 375 - 385
  • [15] GUPTA RR, 2010, USING OPEN SOURCE CO
  • [16] Three-dimensional shape-based searching of conformationally flexible compounds
    Hahn, M
    [J]. JOURNAL OF CHEMICAL INFORMATION AND COMPUTER SCIENCES, 1997, 37 (01): : 80 - 86
  • [17] A-PRIORI PREDICTION OF ACTIVITY FOR HIV-1 PROTEASE INHIBITORS EMPLOYING ENERGY MINIMIZATION IN THE ACTIVE-SITE
    HOLLOWAY, MK
    WAI, JM
    HALGREN, TA
    FITZGERALD, PMD
    VACCA, JP
    DORSEY, BD
    LEVIN, RB
    THOMPSON, WJ
    CHEN, LJ
    DESOLMS, SJ
    GAFFIN, N
    GHOSH, AK
    GIULIANI, EA
    GRAHAM, SL
    GUARE, JP
    HUNGATE, RW
    LYLE, TA
    SANDERS, WM
    TUCKER, TJ
    WIGGINS, M
    WISCOUNT, CM
    WOLTERSDORF, OW
    YOUNG, SD
    DARKE, PL
    ZUGAY, JA
    [J]. JOURNAL OF MEDICINAL CHEMISTRY, 1995, 38 (02) : 305 - 317
  • [18] Similarity-based descriptors (SIBAR) - A tool for safe exchange of chemical information?
    Kaiser, D
    Zdrazil, B
    Ecker, GF
    [J]. JOURNAL OF COMPUTER-AIDED MOLECULAR DESIGN, 2005, 19 (9-10) : 687 - 692
  • [19] Relating protein pharmacology by ligand chemistry
    Keiser, Michael J.
    Roth, Bryan L.
    Armbruster, Blaine N.
    Ernsberger, Paul
    Irwin, John J.
    Shoichet, Brian K.
    [J]. NATURE BIOTECHNOLOGY, 2007, 25 (02) : 197 - 206
  • [20] Predicting new molecular targets for known drugs
    Keiser, Michael J.
    Setola, Vincent
    Irwin, John J.
    Laggner, Christian
    Abbas, Atheir I.
    Hufeisen, Sandra J.
    Jensen, Niels H.
    Kuijer, Michael B.
    Matos, Roberto C.
    Tran, Thuy B.
    Whaley, Ryan
    Glennon, Richard A.
    Hert, Jerome
    Thomas, Kelan L. H.
    Edwards, Douglas D.
    Shoichet, Brian K.
    Roth, Bryan L.
    [J]. NATURE, 2009, 462 (7270) : 175 - U48