Chemical Space: Missing Pieces in Cheminformatics

被引:15
作者
Ekins, Sean [1 ,2 ,3 ,4 ]
Gupta, Rishi R. [5 ]
Gifford, Eric [5 ]
Bunin, Barry A. [2 ]
Waller, Chris L. [5 ]
机构
[1] Collaborat Chem, Jenkintown, PA 19046 USA
[2] Collaborat Drug Discovery, Burlingame, CA 94010 USA
[3] Univ Maryland, Dept Pharmaceut Sci, College Pk, MD 21201 USA
[4] Univ Med & Dent New Jersey, Robert Wood Johnson Med Sch, Dept Pharmacol, Piscataway, NJ 08854 USA
[5] Pfizer Global Res & Dev, Groton, CT 06340 USA
关键词
ADME/Tox; cheminformatics; open chemistry development kit; pharmacophores; QSAR; DATA VISUALIZATION; DRUG; TOOL; DESCRIPTORS; SELECTION; LIBRARY;
D O I
10.1007/s11095-010-0229-0
中图分类号
O6 [化学];
学科分类号
0703 ;
摘要
Cheminformatics is at a turning point, the pharmaceutical industry benefits from using the various methods developed over the last twenty years, but in our opinion we need to see greater development of novel approaches that non-experts can use. This will be achieved by more collaborations between software companies, academics and the evolving pharmaceutical industry. We suggest that cheminformatics should also be looking to other industries that use high performance computing technologies for inspiration. We describe the needs and opportunities which may benefit from the development of open cheminformatics technologies, mobile computing, the movement of software to the cloud and precompetitive initiatives.
引用
收藏
页码:2035 / 2039
页数:5
相关论文
共 44 条
  • [1] [Anonymous], 1962, The structure of scientifc revolutions
  • [2] OPINION Lowering industry firewalls: pre-competitive informatics initiatives in drug discovery
    Barnes, Michael R.
    Harland, Lee
    Foord, Steven M.
    Hall, Matthew D.
    Dix, Ian
    Thomas, Scott
    Williams-Jones, Bryn I.
    Brouwer, Cory R.
    [J]. NATURE REVIEWS DRUG DISCOVERY, 2009, 8 (09) : 701 - 708
  • [3] Identification of common functional configurations among molecules
    Barnum, D
    Greene, J
    Smellie, A
    Sprague, P
    [J]. JOURNAL OF CHEMICAL INFORMATION AND COMPUTER SCIENCES, 1996, 36 (03): : 563 - 571
  • [4] Competitive collaboration in the pharmaceutical and biotechnology industry
    Bingham, Alph
    Ekins, Sean
    [J]. DRUG DISCOVERY TODAY, 2009, 14 (23-24) : 1079 - 1081
  • [5] Christensen C.M., 1997, The innovator's dilema
  • [6] COMPARATIVE MOLECULAR-FIELD ANALYSIS (COMFA) .1. EFFECT OF SHAPE ON BINDING OF STEROIDS TO CARRIER PROTEINS
    CRAMER, RD
    PATTERSON, DE
    BUNCE, JD
    [J]. JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 1988, 110 (18) : 5959 - 5967
  • [7] Progress in predicting human ADME parameters in silico
    Ekins, S
    Waller, CL
    Swaan, PW
    Cruciani, G
    Wrighton, SA
    Wikel, JH
    [J]. JOURNAL OF PHARMACOLOGICAL AND TOXICOLOGICAL METHODS, 2000, 44 (01) : 251 - 272
  • [8] EKINS S, 2009, PRECOMPETITIVE PRECL
  • [9] Application of data mining approaches to drug delivery
    Ekins, Sean
    Shimada, Jun
    Chang, Cheng
    [J]. ADVANCED DRUG DELIVERY REVIEWS, 2006, 58 (12-13) : 1409 - 1430
  • [10] Ekins S, 2005, PHARM DEV, P123, DOI 10.1002/0471728780.ch4