Transcriptome analysis of the biofilm formed by methicillin-susceptible Staphylococcus aureus

被引:63
作者
Tan, Xiaojuan [1 ]
Qin, Nan [2 ]
Wu, Chunyan [4 ]
Sheng, Jiyang [1 ]
Yang, Rui [1 ]
Zheng, Beiwen [2 ]
Ma, Zhanshan [5 ]
Liu, Lin [2 ]
Peng, Xinhua [3 ]
Jia, Aiqun [1 ]
机构
[1] Nanjing Univ Sci & Technol, Sch Environm & Biol Engn, Nanjing 210094, Jiangsu, Peoples R China
[2] Zhejiang Univ, Affiliated Hosp 1, State Key Lab Diag & Treatment Infect Dis, Hangzhou 310003, Zhejiang, Peoples R China
[3] Nanjing Univ Sci & Technol, Sch Chem Engn, Nanjing 210094, Jiangsu, Peoples R China
[4] Realbio Genom Inst, Shanghai 200050, Peoples R China
[5] Chinese Acad Sci, Kunming Inst Zool, Kunming 650223, Peoples R China
基金
中国国家自然科学基金;
关键词
RNA-SEQ DATA; AGR; GENOMICS; DATABASE; ACID; TOOL;
D O I
10.1038/srep11997
中图分类号
O [数理科学和化学]; P [天文学、地球科学]; Q [生物科学]; N [自然科学总论];
学科分类号
07 ; 0710 ; 09 ;
摘要
Biofilm formation is regarded as one of the major determinants in the prevalence of methicillin-resistant Staphylococcus aureus (MRSA) as pathogens of medical device-related infection. However, methicillin-susceptible S. aureus (MSSA) can also form biofilm in vitro and such biofilms are resistant to vancomycin. Hence, researching the possible mechanisms of MSSA biofilm formation is urgent and necessary. Here, we used S. aureus ATCC25923 as the model strain, and studied gene expression profiles in biofilms after the treatment of ursolic acid and resveratrol using RNA-seq technology. The results showed that only ursolic acid could inhibit biofilm formation, which differed from their applied on the multiple clinical drugs resistant MRSA biofilm. RNA-seq data was validated by examining the expression of six genes involved in biofilm formation by qRT-PCR. These data analysis indicated that the mechanism of the MSSA biofilm formation was different from that of the MRSA, due to absence of accessory gene regulator (agr) function. These findings suggest that biofilms of S. aureus with agr dysfunction may be more resistant than those with agr function. Therefore, the infection from clinical MSSA may be recalcitrant once forming biofilm. Further study is necessary to uncover the mechanisms of biofilm formation in other clinical S. aureus.
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页数:12
相关论文
共 41 条
[1]   Gene Ontology: tool for the unification of biology [J].
Ashburner, M ;
Ball, CA ;
Blake, JA ;
Botstein, D ;
Butler, H ;
Cherry, JM ;
Davis, AP ;
Dolinski, K ;
Dwight, SS ;
Eppig, JT ;
Harris, MA ;
Hill, DP ;
Issel-Tarver, L ;
Kasarskis, A ;
Lewis, S ;
Matese, JC ;
Richardson, JE ;
Ringwald, M ;
Rubin, GM ;
Sherlock, G .
NATURE GENETICS, 2000, 25 (01) :25-29
[2]   Copper Stress Induces a Global Stress Response in Staphylococcus aureus and Represses sae and agr Expression and Biofilm Formation [J].
Baker, Jonathan ;
Sitthisak, Sutthirat ;
Sengupta, Mrittika ;
Johnson, Miranda ;
Jayaswal, R. K. ;
Morrissey, Julie A. .
APPLIED AND ENVIRONMENTAL MICROBIOLOGY, 2010, 76 (01) :150-160
[3]   A Combined Pharmacodynamic Quantitative and Qualitative Model Reveals the Potent Activity of Daptomycin and Delafloxacin against Staphylococcus aureus Biofilms [J].
Bauer, Julia ;
Siala, Wafi ;
Tulkens, Paul M. ;
Van Bambeke, Francoise .
ANTIMICROBIAL AGENTS AND CHEMOTHERAPY, 2013, 57 (06) :2726-2737
[4]   agr-mediated dispersal of Staphylococcus aureus biofilms [J].
Boles, Blaise R. ;
Horswill, Alexander R. .
PLOS PATHOGENS, 2008, 4 (04)
[5]   agr-Genotyping and transcriptional analysis of biofilm-producing Staphylococcus aureus [J].
Cafiso, Viviana ;
Bertuccio, Taschia ;
Santagati, Maria ;
Demelio, Vanessa ;
Spina, Daniela ;
Nicoletti, Giuseppe ;
Stefani, Stefania .
FEMS IMMUNOLOGY AND MEDICAL MICROBIOLOGY, 2007, 51 (01) :220-227
[6]  
Cassat James E., 2007, V391, P127
[7]   Blast2GO:: a universal tool for annotation, visualization and analysis in functional genomics research [J].
Conesa, A ;
Götz, S ;
García-Gómez, JM ;
Terol, J ;
Talón, M ;
Robles, M .
BIOINFORMATICS, 2005, 21 (18) :3674-3676
[8]   Analysis of the genetic variability of genes encoding the RNA III-activating components Agr and TRAP in a population of Staphylococcus aureus strains isolated from cows with mastitis [J].
Gilot, P ;
Lina, G ;
Cochard, T ;
Poutrel, B .
JOURNAL OF CLINICAL MICROBIOLOGY, 2002, 40 (11) :4060-4067
[9]   Full-length transcriptome assembly from RNA-Seq data without a reference genome [J].
Grabherr, Manfred G. ;
Haas, Brian J. ;
Yassour, Moran ;
Levin, Joshua Z. ;
Thompson, Dawn A. ;
Amit, Ido ;
Adiconis, Xian ;
Fan, Lin ;
Raychowdhury, Raktima ;
Zeng, Qiandong ;
Chen, Zehua ;
Mauceli, Evan ;
Hacohen, Nir ;
Gnirke, Andreas ;
Rhind, Nicholas ;
di Palma, Federica ;
Birren, Bruce W. ;
Nusbaum, Chad ;
Lindblad-Toh, Kerstin ;
Friedman, Nir ;
Regev, Aviv .
NATURE BIOTECHNOLOGY, 2011, 29 (07) :644-U130
[10]   De novo transcript sequence reconstruction from RNA-seq using the Trinity platform for reference generation and analysis [J].
Haas, Brian J. ;
Papanicolaou, Alexie ;
Yassour, Moran ;
Grabherr, Manfred ;
Blood, Philip D. ;
Bowden, Joshua ;
Couger, Matthew Brian ;
Eccles, David ;
Li, Bo ;
Lieber, Matthias ;
MacManes, Matthew D. ;
Ott, Michael ;
Orvis, Joshua ;
Pochet, Nathalie ;
Strozzi, Francesco ;
Weeks, Nathan ;
Westerman, Rick ;
William, Thomas ;
Dewey, Colin N. ;
Henschel, Robert ;
Leduc, Richard D. ;
Friedman, Nir ;
Regev, Aviv .
NATURE PROTOCOLS, 2013, 8 (08) :1494-1512