Integrative, dynamic structural biology at atomic resolution-it's about time
被引:178
作者:
论文数: 引用数:
h-index:
机构:
van den Bedem, Henry
[1
,2
]
Fraser, James S.
论文数: 0引用数: 0
h-index: 0
机构:
Univ Calif San Francisco, Dept Bioengn & Therapeut Sci, San Francisco, CA 94143 USA
Univ Calif San Francisco, Calif Inst Quantitat Biol, San Francisco, CA 94143 USAStanford Univ, Stanford Synchrotron Radiat Lightsource, Joint Ctr Struct Genom, Menlo Pk, CA 94025 USA
Fraser, James S.
[3
,4
]
机构:
[1] Stanford Univ, Stanford Synchrotron Radiat Lightsource, Joint Ctr Struct Genom, Menlo Pk, CA 94025 USA
[2] Stanford Univ, SLAC Natl Accelerator Lab, Div Biosci, Menlo Pk, CA USA
[3] Univ Calif San Francisco, Dept Bioengn & Therapeut Sci, San Francisco, CA 94143 USA
[4] Univ Calif San Francisco, Calif Inst Quantitat Biol, San Francisco, CA 94143 USA
SOLID-STATE NMR;
X-RAY CRYSTALLOGRAPHY;
RESIDUAL DIPOLAR COUPLINGS;
NUCLEAR-MAGNETIC-RESONANCE;
DIHYDROFOLATE-REDUCTASE CATALYSIS;
PROTEIN CONFORMATIONAL ENSEMBLES;
RESTRAINED MOLECULAR-DYNAMICS;
SIDE-CHAIN DYNAMICS;
CRYSTAL-STRUCTURES;
ORDER PARAMETERS;
D O I:
10.1038/nmeth.3324
中图分类号:
Q5 [生物化学];
学科分类号:
071010 ;
081704 ;
摘要:
Biomolecules adopt a dynamic ensemble of conformations, each with the potential to interact with binding partners or perform the chemical reactions required for a multitude of cellular functions. Recent advances in X-ray crystallography, nuclear magnetic resonance (NMR) spectroscopy and other techniques are helping us realize the dream of seeing-in atomic detail-how different parts of biomolecules shift between functional substates using concerted motions. Integrative structural biology has advanced our understanding of the formation of large macromolecular complexes and how their components interact in assemblies by leveraging data from many low-resolution methods. Here, we review the growing opportunities for integrative, dynamic structural biology at the atomic scale, contending there is increasing synergistic potential between X-ray crystallography, NMR and computer simulations to reveal a structural basis for protein conformational dynamics at high resolution.
机构:
SUNY Buffalo, Dept Phys, Buffalo, NY 14260 USASUNY Buffalo, Dept Phys, Buffalo, NY 14260 USA
Acbas, Gheorghe
Niessen, Katherine A.
论文数: 0引用数: 0
h-index: 0
机构:
SUNY Buffalo, Dept Phys, Buffalo, NY 14260 USASUNY Buffalo, Dept Phys, Buffalo, NY 14260 USA
Niessen, Katherine A.
Snell, Edward H.
论文数: 0引用数: 0
h-index: 0
机构:
SUNY Buffalo, Hauptman Woodward Med Res Inst, Dept Biol Struct, Buffalo, NY 14203 USASUNY Buffalo, Dept Phys, Buffalo, NY 14260 USA
Snell, Edward H.
Markelz, A. G.
论文数: 0引用数: 0
h-index: 0
机构:
SUNY Buffalo, Dept Phys, Buffalo, NY 14260 USA
SUNY Buffalo, Hauptman Woodward Med Res Inst, Dept Biol Struct, Buffalo, NY 14203 USASUNY Buffalo, Dept Phys, Buffalo, NY 14260 USA
机构:
Scripps Res Inst, Dept Integrat Struct & Computat Biol, La Jolla, CA 92037 USA
Scripps Res Inst, Skaggs Inst Chem Biol, La Jolla, CA 92037 USAScripps Res Inst, Dept Integrat Struct & Computat Biol, La Jolla, CA 92037 USA
Bhabha, Gira
Ekiert, Damian C.
论文数: 0引用数: 0
h-index: 0
机构:
Scripps Res Inst, Dept Integrat Struct & Computat Biol, La Jolla, CA 92037 USA
Scripps Res Inst, Skaggs Inst Chem Biol, La Jolla, CA 92037 USAScripps Res Inst, Dept Integrat Struct & Computat Biol, La Jolla, CA 92037 USA
Ekiert, Damian C.
Jennewein, Madeleine
论文数: 0引用数: 0
h-index: 0
机构:
Scripps Res Inst, Dept Integrat Struct & Computat Biol, La Jolla, CA 92037 USA
Scripps Res Inst, Skaggs Inst Chem Biol, La Jolla, CA 92037 USAScripps Res Inst, Dept Integrat Struct & Computat Biol, La Jolla, CA 92037 USA
Jennewein, Madeleine
Zmasek, Christian M.
论文数: 0引用数: 0
h-index: 0
机构:
Sanford Burnham Med Res Inst, Program Bioinformat & Syst Biol, La Jolla, CA USAScripps Res Inst, Dept Integrat Struct & Computat Biol, La Jolla, CA 92037 USA
Zmasek, Christian M.
Tuttle, Lisa M.
论文数: 0引用数: 0
h-index: 0
机构:
Scripps Res Inst, Dept Integrat Struct & Computat Biol, La Jolla, CA 92037 USA
Scripps Res Inst, Skaggs Inst Chem Biol, La Jolla, CA 92037 USAScripps Res Inst, Dept Integrat Struct & Computat Biol, La Jolla, CA 92037 USA
Tuttle, Lisa M.
Kroon, Gerard
论文数: 0引用数: 0
h-index: 0
机构:
Scripps Res Inst, Dept Integrat Struct & Computat Biol, La Jolla, CA 92037 USA
Scripps Res Inst, Skaggs Inst Chem Biol, La Jolla, CA 92037 USAScripps Res Inst, Dept Integrat Struct & Computat Biol, La Jolla, CA 92037 USA
Kroon, Gerard
Dyson, H. Jane
论文数: 0引用数: 0
h-index: 0
机构:
Scripps Res Inst, Dept Integrat Struct & Computat Biol, La Jolla, CA 92037 USA
Scripps Res Inst, Skaggs Inst Chem Biol, La Jolla, CA 92037 USAScripps Res Inst, Dept Integrat Struct & Computat Biol, La Jolla, CA 92037 USA
Dyson, H. Jane
Godzik, Adam
论文数: 0引用数: 0
h-index: 0
机构:
Sanford Burnham Med Res Inst, Program Bioinformat & Syst Biol, La Jolla, CA USAScripps Res Inst, Dept Integrat Struct & Computat Biol, La Jolla, CA 92037 USA
Godzik, Adam
Wilson, Ian A.
论文数: 0引用数: 0
h-index: 0
机构:
Scripps Res Inst, Dept Integrat Struct & Computat Biol, La Jolla, CA 92037 USA
Scripps Res Inst, Skaggs Inst Chem Biol, La Jolla, CA 92037 USAScripps Res Inst, Dept Integrat Struct & Computat Biol, La Jolla, CA 92037 USA
Wilson, Ian A.
Wright, Peter E.
论文数: 0引用数: 0
h-index: 0
机构:
Scripps Res Inst, Dept Integrat Struct & Computat Biol, La Jolla, CA 92037 USA
Scripps Res Inst, Skaggs Inst Chem Biol, La Jolla, CA 92037 USAScripps Res Inst, Dept Integrat Struct & Computat Biol, La Jolla, CA 92037 USA
机构:
Scripps Res Inst, Dept Mol Biol, La Jolla, CA 92037 USA
Scripps Res Inst, Skaggs Inst Chem Biol, La Jolla, CA 92037 USAScripps Res Inst, Dept Mol Biol, La Jolla, CA 92037 USA
Bhabha, Gira
Lee, Jeeyeon
论文数: 0引用数: 0
h-index: 0
机构:
Penn State Univ, Dept Chem, University Pk, PA 16802 USAScripps Res Inst, Dept Mol Biol, La Jolla, CA 92037 USA
Lee, Jeeyeon
Ekiert, Damian C.
论文数: 0引用数: 0
h-index: 0
机构:
Scripps Res Inst, Dept Mol Biol, La Jolla, CA 92037 USA
Scripps Res Inst, Skaggs Inst Chem Biol, La Jolla, CA 92037 USAScripps Res Inst, Dept Mol Biol, La Jolla, CA 92037 USA
Ekiert, Damian C.
Gam, Jongsik
论文数: 0引用数: 0
h-index: 0
机构:
Penn State Univ, Dept Chem, University Pk, PA 16802 USAScripps Res Inst, Dept Mol Biol, La Jolla, CA 92037 USA
Gam, Jongsik
Wilson, Ian A.
论文数: 0引用数: 0
h-index: 0
机构:
Scripps Res Inst, Dept Mol Biol, La Jolla, CA 92037 USA
Scripps Res Inst, Skaggs Inst Chem Biol, La Jolla, CA 92037 USAScripps Res Inst, Dept Mol Biol, La Jolla, CA 92037 USA
Wilson, Ian A.
Dyson, H. Jane
论文数: 0引用数: 0
h-index: 0
机构:
Scripps Res Inst, Dept Mol Biol, La Jolla, CA 92037 USA
Scripps Res Inst, Skaggs Inst Chem Biol, La Jolla, CA 92037 USAScripps Res Inst, Dept Mol Biol, La Jolla, CA 92037 USA
Dyson, H. Jane
Benkovic, Stephen J.
论文数: 0引用数: 0
h-index: 0
机构:
Penn State Univ, Dept Chem, University Pk, PA 16802 USAScripps Res Inst, Dept Mol Biol, La Jolla, CA 92037 USA
Benkovic, Stephen J.
Wright, Peter E.
论文数: 0引用数: 0
h-index: 0
机构:
Scripps Res Inst, Dept Mol Biol, La Jolla, CA 92037 USA
Scripps Res Inst, Skaggs Inst Chem Biol, La Jolla, CA 92037 USAScripps Res Inst, Dept Mol Biol, La Jolla, CA 92037 USA
机构:
SUNY Buffalo, Dept Phys, Buffalo, NY 14260 USASUNY Buffalo, Dept Phys, Buffalo, NY 14260 USA
Acbas, Gheorghe
Niessen, Katherine A.
论文数: 0引用数: 0
h-index: 0
机构:
SUNY Buffalo, Dept Phys, Buffalo, NY 14260 USASUNY Buffalo, Dept Phys, Buffalo, NY 14260 USA
Niessen, Katherine A.
Snell, Edward H.
论文数: 0引用数: 0
h-index: 0
机构:
SUNY Buffalo, Hauptman Woodward Med Res Inst, Dept Biol Struct, Buffalo, NY 14203 USASUNY Buffalo, Dept Phys, Buffalo, NY 14260 USA
Snell, Edward H.
Markelz, A. G.
论文数: 0引用数: 0
h-index: 0
机构:
SUNY Buffalo, Dept Phys, Buffalo, NY 14260 USA
SUNY Buffalo, Hauptman Woodward Med Res Inst, Dept Biol Struct, Buffalo, NY 14203 USASUNY Buffalo, Dept Phys, Buffalo, NY 14260 USA
机构:
Scripps Res Inst, Dept Integrat Struct & Computat Biol, La Jolla, CA 92037 USA
Scripps Res Inst, Skaggs Inst Chem Biol, La Jolla, CA 92037 USAScripps Res Inst, Dept Integrat Struct & Computat Biol, La Jolla, CA 92037 USA
Bhabha, Gira
Ekiert, Damian C.
论文数: 0引用数: 0
h-index: 0
机构:
Scripps Res Inst, Dept Integrat Struct & Computat Biol, La Jolla, CA 92037 USA
Scripps Res Inst, Skaggs Inst Chem Biol, La Jolla, CA 92037 USAScripps Res Inst, Dept Integrat Struct & Computat Biol, La Jolla, CA 92037 USA
Ekiert, Damian C.
Jennewein, Madeleine
论文数: 0引用数: 0
h-index: 0
机构:
Scripps Res Inst, Dept Integrat Struct & Computat Biol, La Jolla, CA 92037 USA
Scripps Res Inst, Skaggs Inst Chem Biol, La Jolla, CA 92037 USAScripps Res Inst, Dept Integrat Struct & Computat Biol, La Jolla, CA 92037 USA
Jennewein, Madeleine
Zmasek, Christian M.
论文数: 0引用数: 0
h-index: 0
机构:
Sanford Burnham Med Res Inst, Program Bioinformat & Syst Biol, La Jolla, CA USAScripps Res Inst, Dept Integrat Struct & Computat Biol, La Jolla, CA 92037 USA
Zmasek, Christian M.
Tuttle, Lisa M.
论文数: 0引用数: 0
h-index: 0
机构:
Scripps Res Inst, Dept Integrat Struct & Computat Biol, La Jolla, CA 92037 USA
Scripps Res Inst, Skaggs Inst Chem Biol, La Jolla, CA 92037 USAScripps Res Inst, Dept Integrat Struct & Computat Biol, La Jolla, CA 92037 USA
Tuttle, Lisa M.
Kroon, Gerard
论文数: 0引用数: 0
h-index: 0
机构:
Scripps Res Inst, Dept Integrat Struct & Computat Biol, La Jolla, CA 92037 USA
Scripps Res Inst, Skaggs Inst Chem Biol, La Jolla, CA 92037 USAScripps Res Inst, Dept Integrat Struct & Computat Biol, La Jolla, CA 92037 USA
Kroon, Gerard
Dyson, H. Jane
论文数: 0引用数: 0
h-index: 0
机构:
Scripps Res Inst, Dept Integrat Struct & Computat Biol, La Jolla, CA 92037 USA
Scripps Res Inst, Skaggs Inst Chem Biol, La Jolla, CA 92037 USAScripps Res Inst, Dept Integrat Struct & Computat Biol, La Jolla, CA 92037 USA
Dyson, H. Jane
Godzik, Adam
论文数: 0引用数: 0
h-index: 0
机构:
Sanford Burnham Med Res Inst, Program Bioinformat & Syst Biol, La Jolla, CA USAScripps Res Inst, Dept Integrat Struct & Computat Biol, La Jolla, CA 92037 USA
Godzik, Adam
Wilson, Ian A.
论文数: 0引用数: 0
h-index: 0
机构:
Scripps Res Inst, Dept Integrat Struct & Computat Biol, La Jolla, CA 92037 USA
Scripps Res Inst, Skaggs Inst Chem Biol, La Jolla, CA 92037 USAScripps Res Inst, Dept Integrat Struct & Computat Biol, La Jolla, CA 92037 USA
Wilson, Ian A.
Wright, Peter E.
论文数: 0引用数: 0
h-index: 0
机构:
Scripps Res Inst, Dept Integrat Struct & Computat Biol, La Jolla, CA 92037 USA
Scripps Res Inst, Skaggs Inst Chem Biol, La Jolla, CA 92037 USAScripps Res Inst, Dept Integrat Struct & Computat Biol, La Jolla, CA 92037 USA
机构:
Scripps Res Inst, Dept Mol Biol, La Jolla, CA 92037 USA
Scripps Res Inst, Skaggs Inst Chem Biol, La Jolla, CA 92037 USAScripps Res Inst, Dept Mol Biol, La Jolla, CA 92037 USA
Bhabha, Gira
Lee, Jeeyeon
论文数: 0引用数: 0
h-index: 0
机构:
Penn State Univ, Dept Chem, University Pk, PA 16802 USAScripps Res Inst, Dept Mol Biol, La Jolla, CA 92037 USA
Lee, Jeeyeon
Ekiert, Damian C.
论文数: 0引用数: 0
h-index: 0
机构:
Scripps Res Inst, Dept Mol Biol, La Jolla, CA 92037 USA
Scripps Res Inst, Skaggs Inst Chem Biol, La Jolla, CA 92037 USAScripps Res Inst, Dept Mol Biol, La Jolla, CA 92037 USA
Ekiert, Damian C.
Gam, Jongsik
论文数: 0引用数: 0
h-index: 0
机构:
Penn State Univ, Dept Chem, University Pk, PA 16802 USAScripps Res Inst, Dept Mol Biol, La Jolla, CA 92037 USA
Gam, Jongsik
Wilson, Ian A.
论文数: 0引用数: 0
h-index: 0
机构:
Scripps Res Inst, Dept Mol Biol, La Jolla, CA 92037 USA
Scripps Res Inst, Skaggs Inst Chem Biol, La Jolla, CA 92037 USAScripps Res Inst, Dept Mol Biol, La Jolla, CA 92037 USA
Wilson, Ian A.
Dyson, H. Jane
论文数: 0引用数: 0
h-index: 0
机构:
Scripps Res Inst, Dept Mol Biol, La Jolla, CA 92037 USA
Scripps Res Inst, Skaggs Inst Chem Biol, La Jolla, CA 92037 USAScripps Res Inst, Dept Mol Biol, La Jolla, CA 92037 USA
Dyson, H. Jane
Benkovic, Stephen J.
论文数: 0引用数: 0
h-index: 0
机构:
Penn State Univ, Dept Chem, University Pk, PA 16802 USAScripps Res Inst, Dept Mol Biol, La Jolla, CA 92037 USA
Benkovic, Stephen J.
Wright, Peter E.
论文数: 0引用数: 0
h-index: 0
机构:
Scripps Res Inst, Dept Mol Biol, La Jolla, CA 92037 USA
Scripps Res Inst, Skaggs Inst Chem Biol, La Jolla, CA 92037 USAScripps Res Inst, Dept Mol Biol, La Jolla, CA 92037 USA