Sample pooling: burden or solution?

被引:33
作者
Grobe, Nadja [1 ]
Cherif, Alhaji [1 ]
Wang, Xiaoling [1 ]
Dong, Zijun [2 ]
Kotanko, Peter [1 ,3 ]
机构
[1] Renal Res Inst, 315 East 62nd St,4th Floor, New York, NY 10065 USA
[2] NYU, Coll Arts & Sci, New York, NY USA
[3] Icahn Sch Med Mt Sinai, New York, NY 10029 USA
基金
美国国家卫生研究院;
关键词
Antibody; Antigen; COVID-19; Pool testing; RT-PCR; SARS-CoV-2; Viral; FEASIBILITY; HIV-1;
D O I
10.1016/j.cmi.2021.04.007
中图分类号
R51 [传染病];
学科分类号
100401 ;
摘要
Background: Pool-testing strategies combine samples from multiple people and test them as a group. A pool-testing approach may shorten the screening time and increase the test rate during times of limited test availability and inadequate reporting speed. Pool testing has been effectively used for a wide variety of infectious disease screening settings. Historically, it originated from serological testing in syphilis. During the current coronavirus disease 2019 (COVID-19) pandemic, pool testing is considered across the globe to inform opening strategies and to monitor infection rates after the implementation of interventions. Aims: This narrative review aims to provide a comprehensive overview of the global efforts to imple-ment pool testing, specifically for COVID-19 screening. Sources: Data were retrieved from a detailed search for peer-reviewed articles and preprint reports using Medline/PubMed, medRxiv, Web of Science, and Google up to 21st March 2021, using search terms "pool testing", "viral", "serum", "SARS-CoV-2" and "COVID-19". Content: This review summarizes the history and theory of pool testing. We identified numerous peer-reviewed articles that describe specific details and practical implementation of pool testing. Successful examples as well as limitations of pool testing, in general and specifically related to the detection of severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) RNA and antibodies, are reviewed. While promising, significant operational, pre-analytical, logistical, and economic challenges need to be over -come to advance pool testing. Implications: The theory of pool testing is well understood and numerous successful examples from the past are available. Operationalization of pool testing requires sophisticated processes that can be adapted to the local medical circumstances. Special attention needs to be paid to sample collection, sample pooling, and strategies to avoid re-sampling. Nadja Grobe, Clin Microbiol Infect 2021;27:1212 (c) 2021 The Author(s). Published by Elsevier Ltd on behalf of European Society of Clinical Microbiology and Infectious Diseases. This is an open access article under the CC BY license (http://creativecommons. org/licenses/by/4.0/).
引用
收藏
页码:1212 / 1220
页数:9
相关论文
共 61 条
[1]   Increasing SARS-CoV-2 RT-qPCR testing capacity by sample pooling [J].
Alcoba-Florez, Julia ;
Gil-Campesino, Helena ;
Garcia-Martinez de Artola, Diego ;
Diez-Gil, Oscar ;
Valenzuela-Fernandez, Agustin ;
Gonzalez-Montelongo, Rafaela ;
Ciuffreda, Laura ;
Flores, Carlos .
INTERNATIONAL JOURNAL OF INFECTIOUS DISEASES, 2021, 103 :19-22
[2]   Serum pooling for rapid expansion of anti-SARS-CoV-2 antibody testing capacity [J].
Allen, J. W. L. ;
Verkerke, H. ;
Owens, J. ;
Saeedi, B. ;
Boyer, D. ;
Shin, S. ;
Roback, J. D. ;
Neish, A. S. ;
Stowell, S. R. .
TRANSFUSION CLINIQUE ET BIOLOGIQUE, 2021, 28 (01) :51-54
[3]  
[Anonymous], 2020, AM J CLIN PATHOL, DOI DOI 10.1093/AJCP/AQAA064
[4]  
[Anonymous], 1991, INSPECTION ERRORS AT
[5]   Optimization of group size in pool testing strategy for SARS-CoV-2: A simple mathematical model [J].
Aragon-Caqueo, Diego ;
Fernandez-Salinas, Javier ;
Laroze, David .
JOURNAL OF MEDICAL VIROLOGY, 2020, 92 (10) :1988-1994
[6]  
Barat B, 2020, J CLIN MICROBIOL
[7]   Large-scale implementation of pooled RNA extraction and RT-PCR for SARS-CoV-2 detection [J].
Ben-Ami, R. ;
Klochendler, A. ;
Seidel, M. ;
Sido, T. ;
Gurel-Gurevich, O. ;
Yassour, M. ;
Meshorer, E. ;
Benedek, G. ;
Fogel, I. ;
Oiknine-Djian, E. ;
Gertler, A. ;
Rotstein, Z. ;
Lavi, B. ;
Dor, Y. ;
Wolf, D. G. ;
Salton, M. ;
Drier, Y. .
CLINICAL MICROBIOLOGY AND INFECTION, 2020, 26 (09) :1248-1253
[8]   Pool Size Selection When Testing for Severe Acute Respiratory Syndrome Coronavirus 2 [J].
Bilder, Christopher R. ;
Iwen, Peter C. ;
Abdalhamid, Baha .
CLINICAL INFECTIOUS DISEASES, 2021, 72 (06) :1104-1105
[9]   MRSA screening by the Xpert MRSA PCR assay: pooling samples of the nose, throat, and groin increases the sensitivity of detection without increasing the laboratory costs [J].
Blanc, D. S. ;
Nahimana, I. ;
Zanetti, G. ;
Greub, G. .
EUROPEAN JOURNAL OF CLINICAL MICROBIOLOGY & INFECTIOUS DISEASES, 2013, 32 (04) :565-568
[10]   Systematic review with meta-analysis of the accuracy of diagnostic tests for COVID-19 [J].
Boger, Beatriz ;
Fachi, Mariana M. ;
Vilhena, Raquel O. ;
Cobre, Alexandre F. ;
Tonin, Fernanda S. ;
Pontarolo, Roberto .
AMERICAN JOURNAL OF INFECTION CONTROL, 2021, 49 (01) :21-29