Complete mitochondrial genome of freshwater pearl mussel Lamellidens marginalis (Lamarck, 1819) and its phylogenetic relation within unionidae family

被引:7
作者
Pavan-Kumar, Annam [1 ]
Varshney, Shubham [2 ]
Suman, Sonal [1 ]
Das, Rekha [3 ]
Chaudhari, A. [1 ]
Krishna, G. [1 ]
机构
[1] ICAR Cent Inst Fisheries Educ, Div Fish Genet & Biotechnol, Yari Rd, Mumbai 400061, Maharashtra, India
[2] Nord Univ, Fac Biosci & Aquaculture, Bodo, Norway
[3] ICAC Complex NEH Reg, Div Fisheries, Tripura Ctr, Lembucherra, India
关键词
Bivalvia; F-type mitochondrial genome; Monophyly; Parreysiinae; Biogeography; DOUBLY UNIPARENTAL INHERITANCE; GLOBAL DIVERSITY; MOLECULAR CLOCK; DNA-SEQUENCE; BIVALVIA; EVOLUTION; CONSERVATION; ORGANIZATION; TRANSMISSION; UNIONOIDA;
D O I
10.1007/s11033-022-07857-5
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
Background Freshwater mussels play a key role in ecology and are often considered as ecological indicators. Conversely, these molluscs are one of the most threatened groups due to several anthropogenic factors. Knowledge of phylogenetic diversity would assist in formulating effective management and conservation measures. Lamellidens marginalis is one of the most widely used freshwater mussel for pearl production in India. The genomic resources for investigating its evolutionary relationship within the Unionidae family are lacking. Methods and Results In this study, the f-type mitochondrial genome of L. marginalis was sequenced using the Illumina sequencing platform. The length of the mitochondrial genome was 15,732 bp consisting of 23 tRNAs, 2 rRNAs and 13 protein coding genes. The arrangement of genes was UF1 type and gene overlap was observed between trnG and nad1. Comparative analysis with other Unionidae species showed a high divergence rate in nad6 followed by nad2 atp8 and nad5. The phylogenetic tree supported monophyly of the Unioninae subfamily and L. marginalis (Parreysiinae) formed a sister branch to this subfamily. The divergence time of the Parreysiinae from its most recent common ancestor (MRCA) was placed in the Mesozoic era. Conclusion This information will be useful for the understanding the evolutionary pattern of the species of Parreysiinae subfamily.
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页码:9593 / 9603
页数:11
相关论文
共 69 条
  • [1] Barik SK, 2004, CURR SCI INDIA, V86, P730
  • [2] MITOS: Improved de novo metazoan mitochondrial genome annotation
    Bernt, Matthias
    Donath, Alexander
    Juehling, Frank
    Externbrink, Fabian
    Florentz, Catherine
    Fritzsch, Guido
    Puetz, Joern
    Middendorf, Martin
    Stadler, Peter F.
    [J]. MOLECULAR PHYLOGENETICS AND EVOLUTION, 2013, 69 (02) : 313 - 319
  • [3] New taxa of freshwater mussels (Unionidae) from a species-rich but overlooked evolutionary hotspot in Southeast Asia
    Bolotov, Ivan N.
    Vikhrev, Ilya V.
    Kondakov, Alexander V.
    Konopleva, Ekaterina S.
    Gofarov, Mikhail Yu.
    Aksenova, Olga V.
    Tumpeesuwan, Sakboworn
    [J]. SCIENTIFIC REPORTS, 2017, 7
  • [4] The complete sequence of the mitochondrial genome of Nautilus macromphalus (Mollusca: Cephalopoda)
    Boore, Jeffrey L.
    [J]. BMC GENOMICS, 2006, 7 (1)
  • [5] BOORE JL, 1994, GENETICS, V138, P423
  • [6] BEAST 2.5: An advanced software platform for Bayesian evolutionary analysis
    Bouckaert, Remco
    Vaughan, Timothy G.
    Barido-Sottani, Joelle
    Duchene, Sebastian
    Fourment, Mathieu
    Gavryushkina, Alexandra
    Heled, Joseph
    Jones, Graham
    Kuehnert, Denise
    De Maio, Nicola
    Matschiner, Michael
    Mendes, Fabio K.
    Mueller, Nicola F.
    Ogilvie, Huw A.
    du Plessis, Louis
    Popinga, Alex
    Rambaut, Andrew
    Rasmussen, David
    Siveroni, Igor
    Suchard, Marc A.
    Wu, Chieh-Hsi
    Xie, Dong
    Zhang, Chi
    Stadler, Tanja
    Drummond, Alexei J.
    [J]. PLOS COMPUTATIONAL BIOLOGY, 2019, 15 (04)
  • [7] Characterization of a mitochondrial ORF from the gender-associated mtDNAs of Mytilus spp. (Bivalvia: Mytilidae): Identification of the "missing" ATPase 8 gene
    Breton, Sophie
    Stewart, Donald T.
    Hoeh, Walter R.
    [J]. MARINE GENOMICS, 2010, 3 (01) : 11 - 18
  • [8] Comparative Mitochondrial Genomics of Freshwater Mussels (Bivalvia: Unionoida) With Doubly Uniparental Inheritance of mtDNA: Gender-Specific Open Reading Frames and Putative Origins of Replication
    Breton, Sophie
    Beaupre, Helene Doucet
    Stewart, Donald T.
    Piontkivska, Helen
    Karmakar, Moumita
    Bogan, Arthur E.
    Blier, Pierre U.
    Hoeh, Walter R.
    [J]. GENETICS, 2009, 183 (04) : 1575 - 1589
  • [9] Complete paternally inherited mitogenomes of two freshwater mussels Unio pictorum and Sinanodonta woodiana (Bivalvia: Unionidae)
    Burzynski, Artur
    Soroka, Marianna
    [J]. PEERJ, 2018, 6
  • [10] The complete maternal and paternal mitochondrial genomes of Unio crassus: Mitochondrial molecular clock and the overconfidence of molecular dating
    Burzynski, Artur
    Soroka, Marianna
    Mioduchowska, Monika
    Kaczmarczyk, Agnieszka
    Sell, Jerzy
    [J]. MOLECULAR PHYLOGENETICS AND EVOLUTION, 2017, 107 : 605 - 608