Complete mitochondrial genome of freshwater pearl mussel Lamellidens marginalis (Lamarck, 1819) and its phylogenetic relation within unionidae family
被引:7
作者:
Pavan-Kumar, Annam
论文数: 0引用数: 0
h-index: 0
机构:
ICAR Cent Inst Fisheries Educ, Div Fish Genet & Biotechnol, Yari Rd, Mumbai 400061, Maharashtra, IndiaICAR Cent Inst Fisheries Educ, Div Fish Genet & Biotechnol, Yari Rd, Mumbai 400061, Maharashtra, India
Pavan-Kumar, Annam
[1
]
Varshney, Shubham
论文数: 0引用数: 0
h-index: 0
机构:
Nord Univ, Fac Biosci & Aquaculture, Bodo, NorwayICAR Cent Inst Fisheries Educ, Div Fish Genet & Biotechnol, Yari Rd, Mumbai 400061, Maharashtra, India
Varshney, Shubham
[2
]
Suman, Sonal
论文数: 0引用数: 0
h-index: 0
机构:
ICAR Cent Inst Fisheries Educ, Div Fish Genet & Biotechnol, Yari Rd, Mumbai 400061, Maharashtra, IndiaICAR Cent Inst Fisheries Educ, Div Fish Genet & Biotechnol, Yari Rd, Mumbai 400061, Maharashtra, India
Suman, Sonal
[1
]
Das, Rekha
论文数: 0引用数: 0
h-index: 0
机构:
ICAC Complex NEH Reg, Div Fisheries, Tripura Ctr, Lembucherra, IndiaICAR Cent Inst Fisheries Educ, Div Fish Genet & Biotechnol, Yari Rd, Mumbai 400061, Maharashtra, India
Das, Rekha
[3
]
Chaudhari, A.
论文数: 0引用数: 0
h-index: 0
机构:
ICAR Cent Inst Fisheries Educ, Div Fish Genet & Biotechnol, Yari Rd, Mumbai 400061, Maharashtra, IndiaICAR Cent Inst Fisheries Educ, Div Fish Genet & Biotechnol, Yari Rd, Mumbai 400061, Maharashtra, India
Chaudhari, A.
[1
]
Krishna, G.
论文数: 0引用数: 0
h-index: 0
机构:
ICAR Cent Inst Fisheries Educ, Div Fish Genet & Biotechnol, Yari Rd, Mumbai 400061, Maharashtra, IndiaICAR Cent Inst Fisheries Educ, Div Fish Genet & Biotechnol, Yari Rd, Mumbai 400061, Maharashtra, India
Krishna, G.
[1
]
机构:
[1] ICAR Cent Inst Fisheries Educ, Div Fish Genet & Biotechnol, Yari Rd, Mumbai 400061, Maharashtra, India
[2] Nord Univ, Fac Biosci & Aquaculture, Bodo, Norway
[3] ICAC Complex NEH Reg, Div Fisheries, Tripura Ctr, Lembucherra, India
Background Freshwater mussels play a key role in ecology and are often considered as ecological indicators. Conversely, these molluscs are one of the most threatened groups due to several anthropogenic factors. Knowledge of phylogenetic diversity would assist in formulating effective management and conservation measures. Lamellidens marginalis is one of the most widely used freshwater mussel for pearl production in India. The genomic resources for investigating its evolutionary relationship within the Unionidae family are lacking. Methods and Results In this study, the f-type mitochondrial genome of L. marginalis was sequenced using the Illumina sequencing platform. The length of the mitochondrial genome was 15,732 bp consisting of 23 tRNAs, 2 rRNAs and 13 protein coding genes. The arrangement of genes was UF1 type and gene overlap was observed between trnG and nad1. Comparative analysis with other Unionidae species showed a high divergence rate in nad6 followed by nad2 atp8 and nad5. The phylogenetic tree supported monophyly of the Unioninae subfamily and L. marginalis (Parreysiinae) formed a sister branch to this subfamily. The divergence time of the Parreysiinae from its most recent common ancestor (MRCA) was placed in the Mesozoic era. Conclusion This information will be useful for the understanding the evolutionary pattern of the species of Parreysiinae subfamily.
机构:
DOE, Joint Genome Inst, Evolutionary Genom Program, Walnut Creek, CA 94598 USADOE, Joint Genome Inst, Evolutionary Genom Program, Walnut Creek, CA 94598 USA
机构:
DOE, Joint Genome Inst, Evolutionary Genom Program, Walnut Creek, CA 94598 USADOE, Joint Genome Inst, Evolutionary Genom Program, Walnut Creek, CA 94598 USA