Structure of Oxalacetate Acetylhydrolase, a Virulence Factor of the Chestnut Blight Fungus

被引:36
作者
Chen, Chen
Sun, Qihong [2 ]
Narayanan, Buvaneswari
Nuss, Donald L. [2 ]
Herzberg, Osnat [1 ]
机构
[1] Univ Maryland, W M Keck Lab Struct Biol, Ctr Adv Res Biotechnol, Inst Biotechnol, Rockville, MD 20850 USA
[2] Univ Maryland, Ctr Biosyst Res, Inst Biotechnol, Rockville, MD 20850 USA
基金
美国国家科学基金会; 美国国家卫生研究院;
关键词
2-METHYLISOCITRATE LYASE PRPB; PETAL DEATH PROTEIN; CRYSTAL-STRUCTURE; OXALATE PRODUCTION; ISOCITRATE LYASE; OXALIC-ACID; CRYPHONECTRIA-PARASITICA; ENZYME SUPERFAMILY; ESCHERICHIA-COLI; CATALYSIS;
D O I
10.1074/jbc.M110.117804
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
Oxalacetate acetylhydrolase (OAH), a member of the phosphoenolpyruvate mutase/isocitrate lyase superfamily, catalyzes the hydrolysis of oxalacetate to oxalic acid and acetate. This study shows that knock-out of the oah gene in Cryphonectria parasitica, the chestnut blight fungus, reduces the ability of the fungus to form cankers on chestnut trees, suggesting that OAH plays a key role in virulence. OAH was produced in Escherichia coli and purified, and its catalytic rates were determined. Oxalacetate is the main OAH substrate, but the enzyme also acts as a lyase of (2R, 3S)-dimethyl malate with similar to 1000-fold lower efficacy. The crystal structure of OAH was determined alone, in complex with a mechanism-based inhibitor, 3,3-difluorooxalacetate (DFOA), and in complex with the reaction product, oxalate, to a resolution limit of 1.30, 1.55, and 1.65 angstrom, respectively. OAH assembles into a dimer of dimers with each subunit exhibiting an (alpha/beta)(8) barrel fold and each pair swapping the 8th alpha-helix. An active site "gating loop" exhibits conformational disorder in the ligand-free structure. To obtain the structures of the OAH center dot ligand complexes, the ligand-free OAH crystals were soaked briefly with DFOA or oxalacetate. DFOA binding leads to ordering of the gating loop in a conformation that sequesters the ligand from the solvent. DFOA binds in a gem-diol form analogous to the oxalacetate intermediate/transition state. Oxalate binds in a planar conformation, but the gating loop is largely disordered. Comparison between the OAH structure and that of the closely related enzyme, 2,3-dimethylmalate lyase, suggests potential determinants of substrate preference.
引用
收藏
页码:26685 / 26696
页数:12
相关论文
共 53 条
[31]   Deletion of the cpku80 gene in the chestnut blight fungus, Cryphonectria parasitica, enhances gene disruption efficiency [J].
Lan, Xiuwan ;
Yao, Ziting ;
Zhou, Yan ;
Shang, Jinjie ;
Lin, Haiyan ;
Nuss, Donald L. ;
Chen, Baoshan .
CURRENT GENETICS, 2008, 53 (01) :59-66
[32]   Oxalate, germins, and higher-plant pathogens [J].
Lane, BG .
IUBMB LIFE, 2002, 53 (02) :67-75
[33]   PROCHECK - A PROGRAM TO CHECK THE STEREOCHEMICAL QUALITY OF PROTEIN STRUCTURES [J].
LASKOWSKI, RA ;
MACARTHUR, MW ;
MOSS, DS ;
THORNTON, JM .
JOURNAL OF APPLIED CRYSTALLOGRAPHY, 1993, 26 :283-291
[34]  
Leatherbarrow RJ, 2007, GRAFIT VERSION 6
[35]   Conformational flexibility of PEP mutase [J].
Liu, SJ ;
Lu, ZB ;
Han, Y ;
Jia, Y ;
Howard, A ;
Dunaway-Mariano, D ;
Herzberg, O .
BIOCHEMISTRY, 2004, 43 (15) :4447-4453
[36]   Crystal structures of 2-methylisocitrate lyase in complex with product and with isocitrate inhibitor provide insight into lyase substrate specificity, catalysis and evolution [J].
Liu, SJ ;
Lu, ZB ;
Han, Y ;
Melamud, E ;
Dunaway-Mariano, D ;
Herzberg, O .
BIOCHEMISTRY, 2005, 44 (08) :2949-2962
[37]   Diversity of function in the isocitrate lyase enzyme superfamily:: The Dianthus caryophyllus petal death protein cleaves α-keto and α-hydroxycarboxylic acids [J].
Lu, ZB ;
Feng, XH ;
Song, L ;
Han, Y ;
Kim, A ;
Herzberg, O ;
Woodson, WR ;
Martin, BM ;
Mariano, PS ;
Dunaway-Mariano, D .
BIOCHEMISTRY, 2005, 44 (50) :16365-16376
[38]   Phaser crystallographic software [J].
McCoy, Airlie J. ;
Grosse-Kunstleve, Ralf W. ;
Adams, Paul D. ;
Winn, Martyn D. ;
Storoni, Laurent C. ;
Read, Randy J. .
JOURNAL OF APPLIED CRYSTALLOGRAPHY, 2007, 40 :658-674
[39]   VMD: Visual molecular dynamics [J].
Humphrey, W ;
Dalke, A ;
Schulten, K .
JOURNAL OF MOLECULAR GRAPHICS & MODELLING, 1996, 14 (01) :33-38
[40]  
Nakagawa Y., 1999, J Infect Chemother, V5, P97, DOI 10.1007/s101560050016