Dissipative-particle-dynamics model of biofilm growth

被引:22
|
作者
Xu, Zhijie [1 ]
Meakin, Paul [2 ,3 ,4 ]
Tartakovsky, Alexandre [1 ]
Scheibe, Timothy D. [5 ]
机构
[1] Pacific NW Natl Lab, Fundamental & Computat Sci Directorate, Computat Math Grp, Richland, WA 99352 USA
[2] Univ Oslo, NO-0316 Oslo, Norway
[3] Idaho Natl Lab, Ctr Adv Modeling & Simulat, Idaho Falls, ID 83415 USA
[4] Inst Energy Technol, Multiphase Flow Assurance Innovat Ctr, NO-2027 Kjeller, Norway
[5] Pacific NW Natl Lab, Energy & Environm Directorate, Hydrol Tech Grp, Richland, WA 99352 USA
来源
PHYSICAL REVIEW E | 2011年 / 83卷 / 06期
关键词
ENERGY-CONSERVATION; REACTIVE TRANSPORT; BIOMASS GROWTH; PHASE-BEHAVIOR; SIMULATION; BILAYERS; SCALE; MECHANICS; FRACTURE; STRESS;
D O I
10.1103/PhysRevE.83.066702
中图分类号
O35 [流体力学]; O53 [等离子体物理学];
学科分类号
070204 ; 080103 ; 080704 ;
摘要
A dissipative-particle-dynamics model for the quantitative simulation of biofilm growth controlled by substrate (nutrient) consumption, advective and diffusive substrate transport, and hydrodynamic interactions with fluid flow (including fragmentation and reattachment) is described. The model was used to simulate biomass growth, decay, and spreading. It predicts how the biofilm morphology depends on flow conditions, biofilm growth kinetics, the rheomechanical properties of the biofilm, and adhesion to solid surfaces. The morphology of the model biofilm depends strongly on its rigidity and the magnitude of the body force that drives the fluid over the biofilm.
引用
收藏
页数:9
相关论文
共 50 条
  • [1] A Dissipative-Particle-Dynamics Model for Simulating Dynamics of Charged Colloids
    Zhou, Jiajia
    Schmid, Friederike
    HIGH PERFORMANCE COMPUTING IN SCIENCE AND ENGINEERING'13: TRANSACTIONS OF THE HIGH PERFORMANCE COMPUTING CENTER, STUTTGART (HLRS) 2013, 2013, : 5 - 18
  • [2] Dissipative-particle-dynamics model for two-phase flows
    Tiwari, Anupam
    Abraham, John
    PHYSICAL REVIEW E, 2006, 74 (05):
  • [3] Alternative expression for Boltzmann temperature of dissipative-particle-dynamics particles
    Tan, Jian Hong
    Yamada, Toru
    Asako, Yutaka
    Tan, Lit Ken
    Sidik, Nor Azwadi Bin Che
    NUMERICAL HEAT TRANSFER PART A-APPLICATIONS, 2022, 82 (03) : 53 - 69
  • [4] Hydrodynamic interactions for single dissipative-particle-dynamics particles and their clusters and filaments
    Pan, Wenxiao
    Fedosov, Dmitry A.
    Karniadakis, George Em
    Caswell, Bruce
    PHYSICAL REVIEW E, 2008, 78 (04):
  • [5] The Influence of Entanglements on the Dynamics of Flash Nanoprecipitation: A Slip-Spring Dissipative-Particle-Dynamics Investigation
    Schneider, Jurek
    Suess, Leonard D.
    Mueller-Plathe, Florian
    JOURNAL OF CHEMICAL AND ENGINEERING DATA, 2020, 65 (03): : 1264 - 1272
  • [6] An extended dissipative particle dynamics model
    Cotter, CJ
    Reich, S
    EUROPHYSICS LETTERS, 2003, 64 (06): : 723 - 729
  • [7] A dissipative particle dynamics model of carbon nanotubes
    Liba, Orly
    Kauzlaric, David
    Abrams, Zeev R.
    Hanein, Yael
    Greiner, Andreas
    Korvink, Jan G.
    MOLECULAR SIMULATION, 2008, 34 (08) : 737 - 748
  • [8] Dynamical regimes in the dissipative particle dynamics model
    Español, P
    Serrano, M
    PHYSICAL REVIEW E, 1999, 59 (06): : 6340 - 6347
  • [9] Anisotropic single-particle dissipative particle dynamics model
    Deng, Mingge
    Pan, Wenxiao
    Karniadakis, George Em
    JOURNAL OF COMPUTATIONAL PHYSICS, 2017, 336 : 481 - 491
  • [10] Mesoscopic dynamics of colloids simulated with dissipative particle dynamics and fluid particle model
    Dzwinel, W
    Yuen, DA
    Boryczko, K
    JOURNAL OF MOLECULAR MODELING, 2002, 8 (01) : 33 - 43