Correlative approaches in single-molecule biophysics: A review of the progress in methods and applications

被引:6
作者
Leake, Mark C. [1 ,2 ]
机构
[1] Univ York, Dept Phys, York, N Yorkshire, England
[2] Univ York, Dept Biol, York, N Yorkshire, England
关键词
SUPERRESOLUTION FLUORESCENCE; MICROSCOPY; FORCES;
D O I
10.1016/j.ymeth.2021.06.012
中图分类号
Q5 [生物化学];
学科分类号
071010 ; 081704 ;
摘要
Here, we discuss a collection of cutting-edge techniques and applications in use today by some of the leading experts in the field of correlative approaches in single molecule biophysics. A key difference in emphasis, compared with traditional single-molecule biophysics approaches detailed previously, is on the emphasis of the development and use of complex methods which explicitly combine multiple approaches to increase biological insights at the single-molecule level. These so-called correlative single-molecule biophysics methods rely on multiple, orthogonal tools and analysis, as opposed to any one single driving technique. Importantly, they span both in vivo and in vitro biological systems as well as the interfaces between theory and experiment in often highly integrated ways, very different to earlier traditional non-integrative approaches. The first applications of correlative single-molecule methods involved adaption of a range of different experimental technologies to the same biological sample whose measurements were synchronised. However, now we find a greater flora of integrated methods emerging that include approaches applied to different samples at different times and yet still permit useful molecular-scale correlations to be performed. The resultant findings often enable far greater precision of length and time scales of measurements, and a more nuanced understanding of the interplay between different processes in the same cell. Many new correlative single-molecule biophysics techniques also include more complex, physiologically relevant approaches as well as an increasing number that combine of approaches advanced computational methods and mathematical analysis with experimental tools. Here, we review the motivation behind the development of correlative single-molecule microscopy methods, its history and recent progress in the field.
引用
收藏
页码:1 / 4
页数:4
相关论文
共 39 条
[1]   Integrating single-molecule spectroscopy and simulations for the study of intrinsically disordered proteins [J].
Alston, Jhullian J. ;
Soranno, Andrea ;
Holehouse, Alex S. .
METHODS, 2021, 193 :116-135
[2]   The 2018 correlative microscopy techniques roadmap [J].
Ando, Toshio ;
Bhamidimarri, Satya Prathyusha ;
Brending, Niklas ;
Colin-York, H. ;
Collinson, Lucy ;
De Jonge, Niels ;
de Pablo, P. J. ;
Debroye, Elke ;
Eggeling, Christian ;
Franck, Christian ;
Fritzsche, Marco ;
Gerritsen, Hans ;
Giepmans, Ben N. G. ;
Grunewald, Kay ;
Hofkens, Johan ;
Hoogenboom, Jacob P. ;
Janssen, Kris P. F. ;
Kaufman, Rainer ;
Klumpermann, Judith ;
Kurniawan, Nyoman ;
Kusch, Jana ;
Liv, Nalan ;
Parekh, Viha ;
Peckys, Diana B. ;
Rehfeldt, Florian ;
Reutens, David C. ;
Roeffaers, Maarten B. J. ;
Salditt, Tim ;
Schaap, Iwan A. T. ;
Schwarz, Ulrich S. ;
Verkade, Paul ;
Vogel, Michael W. ;
Wagner, Richard ;
Winterhalter, Mathias ;
Yuan, Haifeng ;
Zifarelli, Giovanni .
JOURNAL OF PHYSICS D-APPLIED PHYSICS, 2018, 51 (44)
[3]   Multi-dimensional and spatiotemporal correlative imaging at the plasma membrane of live cells to determine the continuum nano-to-micro scale lipid adaptation and collective motion [J].
Bernabe-Rubio, Miguel ;
Bosch-Fortea, Minerva ;
Alonso, Miguel A. ;
Bernardino de la Serna, Jorge .
METHODS, 2021, 193 :136-147
[4]   TopoStats - A program for automated tracing of biomolecules from AFM images [J].
Beton, Joseph G. ;
Moorehead, Robert ;
Helfmann, Luzie ;
Gray, Robert ;
Hoogenboom, Bart W. ;
Joseph, Agnel Praveen ;
Topf, Maya ;
Pyne, Alice L. B. .
METHODS, 2021, 193 :68-79
[5]   Functioning Nanomachines Seen in Real-Time in Living Bacteria Using Single-Molecule and Super-Resolution Fluorescence Imaging [J].
Chiu, Sheng-Wen ;
Leake, Mark C. .
INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES, 2011, 12 (04) :2518-2542
[6]   Super-Resolved Traction Force Microscopy (STFM) [J].
Colin-York, Huw ;
Shrestha, Dilip ;
Felce, James H. ;
Waithe, Dominic ;
Moeendarbary, Emad ;
Davis, Simon J. ;
Eggeling, Christian ;
Fritzsche, Marco .
NANO LETTERS, 2016, 16 (04) :2633-2638
[7]   FLUORESCENCE PHOTOOXIDATION WITH EOSIN - A METHOD FOR HIGH-RESOLUTION IMMUNOLOCALIZATION AND IN-SITU HYBRIDIZATION DETECTION FOR LIGHT AND ELECTRON-MICROSCOPY [J].
DEERINCK, TJ ;
MARTONE, ME ;
LEVRAM, V ;
GREEN, DPL ;
TSIEN, RY ;
SPECTOR, DL ;
HUANG, S ;
ELLISMAN, MH .
JOURNAL OF CELL BIOLOGY, 1994, 126 (04) :901-910
[8]   Single-molecule FRET dynamics of molecular motors in an ABEL trap [J].
Dienerowitz, Maria ;
Howard, Jamieson A. L. ;
Quinn, Steven D. ;
Dienerowitz, Frank ;
Leake, Mark C. .
METHODS, 2021, 193 :96-106
[9]   Amyloid-β oligomerization monitored by single-molecule stepwise photobleaching [J].
Dresser, Lara ;
Hunter, Patrick ;
Yendybayeva, Fatima ;
Hargreaves, Alex L. ;
Howard, Jamieson A. L. ;
Evans, Gareth J. O. ;
Leake, Mark C. ;
Quinn, Steven D. .
METHODS, 2021, 193 :80-95
[10]   SINGLE MYOSIN MOLECULE MECHANICS - PICONEWTON FORCES AND NANOMETER STEPS [J].
FINER, JT ;
SIMMONS, RM ;
SPUDICH, JA .
NATURE, 1994, 368 (6467) :113-119