Diagnosis of Neuroinvasive Astrovirus Infection in an Immunocompromised Adult With Encephalitis by Unbiased Next-Generation Sequencing

被引:244
作者
Naccache, Samia N. [1 ,2 ]
Peggs, Karl S. [3 ]
Mattes, Frank M. [4 ]
Phadke, Rahul [5 ]
Garson, Jeremy A. [7 ]
Grant, Paul [4 ]
Samayoa, Erik [1 ,2 ]
Federman, Scot [1 ,2 ]
Miller, Steve [1 ,2 ]
Lunn, Michael P. [6 ]
Gant, Vanya [4 ]
Chiu, Charles Y. [1 ,2 ,8 ]
机构
[1] Univ Calif San Francisco, Dept Lab Med, San Francisco, CA 94107 USA
[2] Univ Calif San Francisco, Abbott Viral Diagnost & Discovery Ctr, San Francisco, CA 94107 USA
[3] Univ Coll London Hosp NHS Fdn Trust, Dept Clin Hematol, London, England
[4] Univ Coll London Hosp NHS Fdn Trust, Dept Clin Microbiol, London, England
[5] Univ Coll London Hosp NHS Fdn Trust, Dept Neuropathol, London, England
[6] Univ Coll London Hosp NHS Fdn Trust, Dept Neurol, London, England
[7] UCL, Div Infect & Immun, Res Dept Infect, London WC1E 6BT, England
[8] Univ Calif San Francisco, Dept Med, Div Infect Dis, San Francisco, CA 94107 USA
基金
美国国家卫生研究院;
关键词
VA/HMO astrovirus clade; encephalitis; deafness; next-generation sequencing; pathogen discovery; CATTLE;
D O I
10.1093/cid/ciu912
中图分类号
R392 [医学免疫学]; Q939.91 [免疫学];
学科分类号
100102 ;
摘要
Metagenomic next-generation sequencing (NGS) was used to diagnose an unusual and fatal case of progressive encephalitis in an immunocompromised adult presenting at disease onset as bilateral hearing loss. The sequencing and confirmatory studies revealed neuroinvasive infection of the brain by an astrovirus belonging to a recently discovered VA/HMO clade.
引用
收藏
页码:919 / 923
页数:5
相关论文
共 13 条
[1]  
BJORKHOLM M, 1995, INT J HEMATOL, V62, P117
[2]   Detection of a Novel Astrovirus in Brain Tissue of Mink Suffering from Shaking Mink Syndrome by Use of Viral Metagenomics [J].
Blomstrom, Anne-Lie ;
Widen, Frederik ;
Hammer, Anne-Sofie ;
Belak, Sandor ;
Berg, Mikael .
JOURNAL OF CLINICAL MICROBIOLOGY, 2010, 48 (12) :4392-4396
[3]   Neurotropic Astrovirus in Cattle with Nonsuppurative Encephalitis in Europe [J].
Bouzalas, Ilias G. ;
Wuethrich, Daniel ;
Walland, Julia ;
Droegemueller, Cord ;
Zurbriggen, Andreas ;
Vandevelde, Marc ;
Oevermann, Anna ;
Bruggmann, Remy ;
Seuberlich, Torsten .
JOURNAL OF CLINICAL MICROBIOLOGY, 2014, 52 (09) :3318-3324
[4]   Serological Studies Confirm the Novel Astrovirus HMOAstV-C as a Highly Prevalent Human Infectious Agent [J].
Burbelo, Peter D. ;
Ching, Kathryn H. ;
Esper, Frank ;
Iadarola, Michael J. ;
Delwart, Eric ;
Lipkin, W. Ian ;
Kapoor, Amit .
PLOS ONE, 2011, 6 (08)
[5]   Identification of a Novel Astrovirus (Astrovirus VA1) Associated with an Outbreak of Acute Gastroenteritis [J].
Finkbeiner, Stacy R. ;
Li, Yan ;
Ruone, Susan ;
Conrardy, Christina ;
Gregoricus, Nicole ;
Toney, Denise ;
Virgin, Herbert W. ;
Anderson, Larry J. ;
Vinje, Jan ;
Wang, David ;
Tong, Suxiang .
JOURNAL OF VIROLOGY, 2009, 83 (20) :10836-10839
[6]   Beyond viruses: Clinical profiles and etiologies associated with encephalitis [J].
Glaser, C. A. ;
Honarmand, S. ;
Anderson, L. J. ;
Schnurr, D. P. ;
Forghani, B. ;
Cossen, C. K. ;
Schuster, F. L. ;
Christie, L. J. ;
Tureen, J. H. .
CLINICAL INFECTIOUS DISEASES, 2006, 43 (12) :1565-1577
[7]   Comparison of novel MLB-clade, VA-clade and classic human astroviruses highlights constrained evolution of the classic human astrovirus nonstructural genes [J].
Jiang, Hongbing ;
Holtz, Lori R. ;
Bauer, Irma ;
Franz, Carl J. ;
Zhao, Guoyan ;
Bodhidatta, Ladaporn ;
Shrestha, Sanjaya K. ;
Kang, Gagandeep ;
Wang, David .
VIROLOGY, 2013, 436 (01) :8-14
[8]   Multiple novel astrovirus species in human stool [J].
Kapoor, A. ;
Li, L. ;
Victoria, J. ;
Oderinde, B. ;
Mason, C. ;
Pandey, P. ;
Zaidi, S. Z. ;
Delwart, E. .
JOURNAL OF GENERAL VIROLOGY, 2009, 90 :2965-2972
[9]   Divergent Astrovirus Associated with Neurologic Disease in Cattle [J].
Li, Linlin ;
Diab, Santiago ;
McGraw, Sabrina ;
Barr, Bradd ;
Traslavina, Ryan ;
Higgins, Robert ;
Talbot, Tom ;
Blanchard, Pat ;
Rimoldi, Guillermo ;
Fahsbender, Elizabeth ;
Page, Brady ;
Phan, Tung Gia ;
Wang, Chunlin ;
Deng, Xutao ;
Pesavento, Patricia ;
Delwart, Eric .
EMERGING INFECTIOUS DISEASES, 2013, 19 (09) :1385-1392
[10]   A cloud-compatible bioinformatics pipeline for ultrarapid pathogen identification from next-generation sequencing of clinical samples [J].
Naccache, Samia N. ;
Federman, Scot ;
Veeraraghavan, Narayanan ;
Zaharia, Matei ;
Lee, Deanna ;
Samayoa, Erik ;
Bouquet, Jerome ;
Greninger, Alexander L. ;
Luk, Ka-Cheung ;
Enge, Barryett ;
Wadford, Debra A. ;
Messenger, Sharon L. ;
Genrich, Gillian L. ;
Pellegrino, Kristen ;
Grard, Gilda ;
Leroy, Eric ;
Schneider, Bradley S. ;
Fair, Joseph N. ;
Martinez, Miguel A. ;
Isa, Pavel ;
Crump, John A. ;
DeRisi, Joseph L. ;
Sittler, Taylor ;
Hackett, John, Jr. ;
Miller, Steve ;
Chiu, Charles Y. .
GENOME RESEARCH, 2014, 24 (07) :1180-1192