FamLinkX - implementation of a general model for likelihood computations for X-chromosomal marker data

被引:39
作者
Kling, Daniel [1 ,2 ]
Dell'Amico, Barbara [3 ]
Tillmar, Andreas O. [3 ,4 ]
机构
[1] Norwegian Inst Publ Hlth, Dept Family Genet, NO-0403 Oslo, Norway
[2] Norwegian Univ Life Sci, Dept Chem Biotechnol & Food Sci, As, Norway
[3] Natl Board Forens Med, Dept Forens Genet & Forens Toxicol, SE-58758 Linkoping, Sweden
[4] Linkoping Univ, Fac Hlth Sci, Dept Clin & Expt Med, Linkoping, Sweden
关键词
Linkage; X chromosome; FamLinkX; Linkage disequilibrium; Mutations; GENETIC-ANALYSIS; LINKAGE DISEQUILIBRIUM; POPULATION; PATERNITY; STRS;
D O I
10.1016/j.fsigen.2015.02.007
中图分类号
Q3 [遗传学];
学科分类号
071007 ; 090102 ;
摘要
The use of genetic markers located on the X chromosome has seen a significant increase in the last years and their utility has been well studied. This paper describes the software FamLinkX, freely available at http://www.famlink.se, implementing a new algorithm for likelihood computations accounting for linkage, linkage disequilibrium and mutations. It is obvious that such software is sought for among forensic users as more and more X-chromosomal markers become available. We provide some simulated examples demonstrating the utility of the implementation as well as its application in forensic casework. Though algebraic derivations are generally unfeasible, the paper outlines some theoretical considerations and provides a discussion on the validation of the software. The focus of this paper is to compare the software to existing methods in a forensic setting, perform a validation study as well as to provide an idea of the discriminatory power for X-chromosomal markers. (C) 2015 Elsevier Ireland Ltd. All rights reserved.
引用
收藏
页码:1 / 7
页数:7
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