Deciphering the TCR Repertoire to Solve the COVID-19 Mystery

被引:47
作者
Gutierrez, Lucas [1 ]
Beckford, John [1 ]
Alachkar, Houda [1 ]
机构
[1] Univ Southern Calif, Sch Pharm, Dept Clin Pharm, Los Angeles, CA 90089 USA
关键词
T-CELL RESPONSE; IMMUNE-RESPONSE; CLASS-I; SELECTION; RECOGNITION; INFECTION; REGION; GENES; BLOOD;
D O I
10.1016/j.tips.2020.06.001
中图分类号
R9 [药学];
学科分类号
1007 ;
摘要
The severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) has infected several millions and killed more than quarter of a million worldwide to date. Im- portant questions have remained unanswered: why some patients develop se- vere disease, while others do not; and what roles do genetic variabilities play in the individual immune response to this viral infection. Here, we discuss the crit- ical role T cells play in the orchestration of the antiviral response underlying the pathogenesis of the disease, COVID-19. We highlight the scientific rationale for comprehensive and longitudinal TCR analyses in COVID-19 and reason that an- alyzing TCR repertoire in COVID-19 patients would reveal important findings that may explain the outcome disparity observed in these patients. Finally, we pro- vide a framework describing the different strategies, the advantages, and the challenges involved in obtaining useful TCR repertoire data to advance our fight against COVID-19.
引用
收藏
页码:518 / 530
页数:13
相关论文
共 79 条
[11]   Practical Guidance for Clinical Microbiology Laboratories: Viruses Causing Acute Respiratory Tract Infections [J].
Charlton, Carmen L. ;
Babady, Esther ;
Ginocchio, Christine C. ;
Hatchette, Todd F. ;
Jerris, Robert C. ;
Li, Yan ;
Loeffelholz, Mike ;
McCarter, Yvette S. ;
Miller, Melissa B. ;
Novak-Weekley, Susan ;
Schuetz, Audrey N. ;
Tang, Yi-Wei ;
Widen, Ray ;
Drews, Steven J. .
CLINICAL MICROBIOLOGY REVIEWS, 2019, 32 (01)
[12]   Clinical and immunological features of severe and moderate coronavirus disease 2019 [J].
Chen, Guang ;
Wu, Di ;
Guo, Wei ;
Cao, Yong ;
Huang, Da ;
Wang, Hongwu ;
Wang, Tao ;
Zhang, Xiaoyun ;
Chen, Huilong ;
Yu, Haijing ;
Zhang, Xiaoping ;
Zhang, Minxia ;
Wu, Shiji ;
Song, Jianxin ;
Chen, Tao ;
Han, Meifang ;
Li, Shusheng ;
Luo, Xiaoping ;
Zhao, Jianping ;
Ning, Qin .
JOURNAL OF CLINICAL INVESTIGATION, 2020, 130 (05) :2620-2629
[13]   Sequence and Structural Analyses Reveal Distinct and Highly Diverse Human CD8+ TCR Repertoires to Immunodominant Viral Antigens [J].
Chen, Guobing ;
Yang, Xinbo ;
Ko, Annette ;
Sun, Xiaoping ;
Gao, Mingming ;
Zhang, Yongqing ;
Shi, Alvin ;
Mariuzza, Roy A. ;
Weng, Nan-Ping .
CELL REPORTS, 2017, 19 (03) :569-583
[14]   Quantifiable predictive features define epitope-specific T cell receptor repertoires [J].
Dash, Pradyot ;
Fiore-Gartland, Andrew J. ;
Hertz, Tomer ;
Wang, George C. ;
Sharma, Shalini ;
Souquette, Aisha ;
Crawford, Jeremy Chase ;
Clemens, E. Bridie ;
Nguyen, Thi H. O. ;
Kedzierska, Katherine ;
La Gruta, Nicole L. ;
Bradley, Philip ;
Thomas, Paul G. .
NATURE, 2017, 547 (7661) :89-+
[15]   Effectiveness of convalescent plasma therapy in severe COVID-19 patients [J].
Duan, Kai ;
Liu, Bende ;
Li, Cesheng ;
Zhang, Huajun ;
Yu, Ting ;
Qu, Jieming ;
Zhou, Min ;
Chen, Li ;
Meng, Shengli ;
Hu, Yong ;
Peng, Cheng ;
Yuan, Mingchao ;
Huang, Jinyan ;
Wang, Zejun ;
Yu, Jianhong ;
Gao, Xiaoxiao ;
Wang, Dan ;
Yu, Xiaoqi ;
Li, Li ;
Zhang, Jiayou ;
Wu, Xiao ;
Li, Bei ;
Xu, Yanping ;
Chen, Wei ;
Peng, Yan ;
Hu, Yeqin ;
Lin, Lianzhen ;
Liu, Xuefei ;
Huang, Shihe ;
Zhou, Zhijun ;
Zhang, Lianghao ;
Wang, Yue ;
Zhang, Zhi ;
Deng, Kun ;
Xia, Zhiwu ;
Gong, Qin ;
Zhang, Wei ;
Zheng, Xiaobei ;
Liu, Ying ;
Yang, Huichuan ;
Zhou, Dongbo ;
Yu, Ding ;
Hou, Jifeng ;
Shi, Zhengli ;
Chen, Saijuan ;
Chen, Zhu ;
Zhang, Xinxin ;
Yang, Xiaoming .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2020, 117 (17) :9490-9496
[16]   Immunosequencing identifies signatures of cytomegalovirus exposure history and HLA-mediated effects on the T cell repertoire [J].
Emerson, Ryan O. ;
DeWitt, William S. ;
Vignali, Marissa ;
Gravley, Jenna ;
Hu, Joyce K. ;
Osborne, Edward J. ;
Desmarais, Cindy ;
Klinger, Mark ;
Carlson, Christopher S. ;
Hansen, John A. ;
Rieder, Mark ;
Robins, Harlan S. .
NATURE GENETICS, 2017, 49 (05) :659-+
[17]  
ESTEVEZ H, 2020, MBIO, V11, DOI DOI 10.3389/FMICB.2020.00800
[18]   An Increased Frequency in HLA Class I Alleles and Haplotypes Suggests Genetic Susceptibility to Influenza A (H1N1) 2009 Pandemic: A Case-Control Study [J].
Falfan-Valencia, Ramces ;
Narayanankutty, Arun ;
Resendiz-Hernandez, Juan M. ;
Perez-Rubio, Gloria ;
Ramirez-Venegas, Alejandra ;
Nava-Quiroz, Karol J. ;
Bautista-Felix, Nora E. ;
Vargas-Alarcon, Gilberto ;
Castillejos-Lopez, Manuel D. J. ;
Hernandez, Andres .
JOURNAL OF IMMUNOLOGY RESEARCH, 2018, 2018
[19]   Design of a multi-center immunophenotyping analysis of peripheral blood, sputum and bronchoalveolar lavage fluid in the Subpopulations and Intermediate Outcome Measures in COPD Study (SPIROMICS) [J].
Freeman, Christine M. ;
Crudgington, Sean ;
Stolberg, Valerie R. ;
Brown, Jeanette P. ;
Sonstein, Joanne ;
Alexis, Neil E. ;
Doerschuk, Claire M. ;
Basta, Patricia V. ;
Carretta, Elizabeth E. ;
Couper, David J. ;
Hastie, Annette T. ;
Kaner, Robert J. ;
O'Neal, Wanda K. ;
Paine, Robert, III ;
Rennard, Stephen I. ;
Shimbo, Daichi ;
Woodruff, Prescott G. ;
Zeidler, Michelle ;
Curtis, Jeffrey L. .
JOURNAL OF TRANSLATIONAL MEDICINE, 2015, 13
[20]   Narrowing of Human Influenza A Virus-Specific T Cell Receptor α and β Repertoires with Increasing Age [J].
Gil, Anna ;
Yassai, Maryam B. ;
Naumov, Yuri N. ;
Selin, Liisa K. .
JOURNAL OF VIROLOGY, 2015, 89 (08) :4102-4116