Machine Learning Applications in Drug Repurposing

被引:39
作者
Yang, Fan [1 ,2 ]
Zhang, Qi [2 ]
Ji, Xiaokang [1 ,2 ]
Zhang, Yanchun [3 ,4 ]
Li, Wentao [6 ]
Peng, Shaoliang [5 ,6 ,7 ]
Xue, Fuzhong [1 ,2 ]
机构
[1] Shandong Univ, Cheeloo Coll Med, Sch Publ Hlth, Dept Biostat, Jinan 250012, Peoples R China
[2] Shandong Univ, Inst Med Dataol, Cheeloo Coll Med, Jinan 250012, Peoples R China
[3] Victoria Univ, Inst Sustainable Ind & Liveable Citie, Melbourne, Vic, Australia
[4] Zhejiang Lab Regenerat Med Vis & Brain Hlth, Oujiang Lab, Wenzhou 325001, Zhejiang, Peoples R China
[5] Hunan Univ, Coll Comp Sci & Elect Engn, Changsha, Peoples R China
[6] Natl Univ Def Technol, Sch Comp Sci, Changsha, Peoples R China
[7] Peng Cheng Lab, Shenzhen, Peoples R China
基金
中国博士后科学基金;
关键词
Machine learning; Deep learning; COVID-19; Drug repurposing;
D O I
10.1007/s12539-021-00487-8
中图分类号
Q [生物科学];
学科分类号
07 ; 0710 ; 09 ;
摘要
The coronavirus disease (COVID-19) has led to an rush to repurpose existing drugs, although the underlying evidence base is of variable quality. Drug repurposing is a technique by taking advantage of existing known drugs or drug combinations to be explored in an unexpected medical scenario. Drug repurposing, hence, plays a vital role in accelerating the pre-clinical process of designing novel drugs by saving time and cost compared to the traditional de novo drug discovery processes. Since drug repurposing depends on massive observed data from existing drugs and diseases, the tremendous growth of publicly available large-scale machine learning methods supplies the state-of-the-art application of data science to signaling disease, medicine, therapeutics, and identifying targets with the least error. In this article, we introduce guidelines on strategies and options of utilizing machine learning approaches for accelerating drug repurposing. We discuss how to employ machine learning methods in studying precision medicine, and as an instance, how machine learning approaches can accelerate COVID-19 drug repurposing by developing Chinese traditional medicine therapy. This article provides a strong reasonableness for employing machine learning methods for drug repurposing, including during fighting for COVID-19 pandemic.
引用
收藏
页码:15 / 21
页数:7
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