The chloroplast genome of Fallopia aubertii (Polygonaceae) from Xining, China

被引：1
作者：
Lu, Yongchang [1 ,2 ]
Wang, Wancui [1 ,2 ]
Yu, Yingxiang [1 ,2 ]
Ma, Qian [1 ,2 ]
Wang, Huan [1 ,2 ]
机构：
[1] Qinghai Minzu Univ, Coll Pharm, Xining 810007, Peoples R China
[2] Key Lab Tibet Plateau Phytochem Qinghai Prov, Xining, Peoples R China
来源：
MITOCHONDRIAL DNA PART B-RESOURCES | 2021年 / 6卷 / 12期
关键词：
Chloroplast genome; evolutionary analysis; Fallopia aubertii; Polygonaceae; MITOCHONDRIAL; PHYLOGENY; ALIGNMENT; PLASTOME; DNA;
D O I：
10.1080/23802359.2021.2001390
中图分类号：
Q3 [遗传学];
学科分类号：
071007 ; 090102 ;
摘要：
Fallopia aubertii (L.Henry) Holub (Polygonaceae), a woody plant with a voluble stem, is used as a folk herbal medicines for the treatment of gout, fever and pneumonia. To better understand the molecular genetics of F. aubertii, its complete chloroplast genome was sequenced and annotated. The assembled chloroplast genome is a circular 160,951 bp sequence consisting of large single copy (87,279 bp) and small single copy (13,394 bp) regions, separated by two inverted repeat regions (30,860 bp each). The genome contains 131 genes including 86 protein-coding, 37 tRNA and 8 tRNA genes. Phylogenetic analysis based on the complete chloroplast genome showed that F. aubertii is more closely related to M. australis than to F. sachalinensis, which exhibited a polyphyletic relationship with respect to F. aubertii. These results require further analyses. This study provides additional data for reconstructing species relationships in Fallopia.
引用
收藏
页码：3458 / 3460
页数：3
相关论文
共 15 条
  • [1] SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell Sequencing
    Bankevich, Anton
    Nurk, Sergey
    Antipov, Dmitry
    Gurevich, Alexey A.
    Dvorkin, Mikhail
    Kulikov, Alexander S.
    Lesin, Valery M.
    Nikolenko, Sergey I.
    Son Pham
    Prjibelski, Andrey D.
    Pyshkin, Alexey V.
    Sirotkin, Alexander V.
    Vyahhi, Nikolay
    Tesler, Glenn
    Alekseyev, Max A.
    Pevzner, Pavel A.
    [J]. JOURNAL OF COMPUTATIONAL BIOLOGY, 2012, 19 (05) : 455 - 477
  • [2] Scaffolding pre-assembled contigs using SSPACE
    Boetzer, Marten
    Henkel, Christiaan V.
    Jansen, Hans J.
    Butler, Derek
    Pirovano, Walter
    [J]. BIOINFORMATICS, 2011, 27 (04) : 578 - 579
  • [3] MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability
    Katoh, Kazutaka
    Standley, Daron M.
    [J]. MOLECULAR BIOLOGY AND EVOLUTION, 2013, 30 (04) : 772 - 780
  • [4] Kumar S, 2016, MOL BIOL EVOL, V33, P1870, DOI [10.1093/molbev/msw054, 10.1093/molbev/msv279]
  • [5] Langmead B, 2012, NAT METHODS, V9, P357, DOI [10.1038/NMETH.1923, 10.1038/nmeth.1923]
  • [6] Phylogenetic analysis of 83 plastid genes further resolves the early diversification of eudicots
    Moore, Michael J.
    Soltis, Pamela S.
    Bell, Charles D.
    Burleigh, J. Gordon
    Soltis, Douglas E.
    [J]. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2010, 107 (10) : 4623 - 4628
  • [7] Annotated plastome of the temperate woody vine Muehlenbeckia australis (G.Forst.) Meisn. (Polygonaceae)
    Schuster, Tanja M.
    Gibbs, Moreland D.
    Bayly, Michael J.
    [J]. MITOCHONDRIAL DNA PART B-RESOURCES, 2018, 3 (01): : 399 - 400
  • [8] An updated molecular phylogeny of Polygonoideae (Polygonaceae): Relationships of Oxygonum, Pteroxygonum, and Rumex, and a new circumscription of Koenigia
    Schuster, Tanja M.
    Reveal, James L.
    Bayly, Michael J.
    Kron, Kathleen A.
    [J]. TAXON, 2015, 64 (06) : 1188 - 1208
  • [9] Phylogeny of Polygoneae (Polygonaceae: Polygonoideae)
    Schuster, Tanja M.
    Reveal, James L.
    Kron, Kathleen A.
    [J]. TAXON, 2011, 60 (06) : 1653 - 1666
  • [10] CHLOROPLAST DNA SEQUENCE UTILITY FOR THE LOWEST PHYLOGENETIC AND PHYLOGEOGRAPHIC INFERENCES IN ANGIOSPERMS: THE TORTOISE AND THE HARE IV
    Shaw, Joey
    Shafer, Hayden L.
    Leonard, O. Rayne
    Kovach, Margaret J.
    Schorr, Mark
    Morris, Ashley B.
    [J]. AMERICAN JOURNAL OF BOTANY, 2014, 101 (11) : 1987 - 2004
12