DDIWAS: High-throughput electronic health record-based screening of drug-drug interactions

被引:12
作者
Wu, Patrick [1 ,2 ]
Nelson, Scott D. [1 ,3 ]
Zhao, Juan [1 ]
Stone, Cosby A., Jr. [4 ]
Feng, QiPing [5 ]
Chen, Qingxia [1 ,6 ]
Larson, Eric A. [7 ]
Li, Bingshan [8 ,9 ]
Cox, Nancy J. [9 ,10 ]
Stein, C. Michael [5 ,10 ,11 ]
Phillips, Elizabeth J. [11 ,12 ,13 ]
Roden, Dan M. [1 ,10 ,11 ]
Denny, Joshua C. [1 ,14 ]
Wei, Wei-Qi [1 ]
机构
[1] Vanderbilt Univ, Dept Biomed Informat, Med Ctr, 2525 West End Ave,Suite 1500, Nashville, TN 37203 USA
[2] Vanderbilt Univ, Med Scientist Training Program, Sch Med, Nashville, TN USA
[3] Vanderbilt Univ, HealthIT, Med Ctr, Nashville, TN USA
[4] Vanderbilt Univ, Dept Med, Div Allergy Pulm & Crit Care Med, Med Ctr, Nashville, TN USA
[5] Vanderbilt Univ, Dept Med, Div Clin Pharmacol, Med Ctr, Nashville, TN USA
[6] Vanderbilt Univ, Dept Biostat, Sch Med, Nashville, TN USA
[7] Univ South Dakota, Dept Med, Sanford Sch Med, Sioux Falls, SD USA
[8] Vanderbilt Univ, Dept Mol Physiol & Biophys, Sch Med, Nashville, TN USA
[9] Vanderbilt Univ, Vanderbilt Genet Inst, Dept Med, Med Ctr, Nashville, TN USA
[10] Vanderbilt Univ, Med Ctr, Dept Med, Nashville, TN USA
[11] Vanderbilt Univ, Dept Pharmacol, Sch Med, Nashville, TN USA
[12] Vanderbilt Univ, Dept Med, Div Infect Dis, Med Ctr, Nashville, TN USA
[13] Vanderbilt Univ, Dept Pathol Microbiol & Immunol, Med Ctr, Nashville, TN USA
[14] NIH, All US Res Program, Bethesda, MD USA
基金
美国国家卫生研究院;
关键词
drug interactions; drug-related side effects; adverse reactions; pharmacovigilance; electronic health records; data mining; DIETARY-SUPPLEMENT; CLINICAL TEXT; UNITED-STATES; GENOME-WIDE; HYPERTENSION; PRESCRIPTION; ASSOCIATION; MEDICATION; GENERATION; VERAPAMIL;
D O I
10.1093/jamia/ocab019
中图分类号
TP [自动化技术、计算机技术];
学科分类号
0812 ;
摘要
Objective: We developed and evaluated Drug-Drug Interaction Wide Association Study (DDIWAS). This novel method detects potential drug-drug interactions (DDIs) by leveraging data from the electronic health record (EHR) allergy list. Materials and Methods: To identify potential DDIs, DDIWAS scans for drug pairs that are frequently documented together on the allergy list. Using deidentified medical records, we tested 616 drugs for potential DDIs with simvastatin (a common lipid-lowering drug) and amlodipine (a common blood-pressure lowering drug). We evaluated the performance to rediscover known DDIs using existing knowledge bases and domain expert review. To validate potential novel DDIs, we manually reviewed patient charts and searched the literature. Results: DDIWAS replicated 34 known DDIs. The positive predictive value to detect known DDIs was 0.85 and 0.86 for simvastatin and amlodipine, respectively. DDIWAS also discovered potential novel interactions between simvastatin-hydrochlorothiazide, amlodipine-omeprazole, and amlodipine-valacyclovir. A software package to conduct DDIWAS is publicly available. Conclusions: In this proof-of-concept study, we demonstrate the value of incorporating information mined from existing allergy lists to detect DDIs in a real-world clinical setting. Since allergy lists are routinely collected in EHRs, DDIWAS has the potential to detect and validate DDI signals across institutions.
引用
收藏
页码:1421 / 1430
页数:10
相关论文
共 53 条
[1]   Disproportionality analysis using empirical Bayes data mining: a tool for the evaluation of drug interactions in the post-marketing setting [J].
Almenoff, JS ;
DuMouchel, W ;
Kindman, LA ;
Yang, XH ;
Fram, D .
PHARMACOEPIDEMIOLOGY AND DRUG SAFETY, 2003, 12 (06) :517-521
[2]  
[Anonymous], 2017, CLIN DRUG INTERACTIO
[3]   Intensive lowering of LDL cholesterol with 80 mg versus 20 mg simvastatin daily in 12 064 survivors of myocardial infarction: a double-blind randomised trial [J].
Armitage, Jane ;
Bowman, Louise ;
Wallendszus, Karl ;
Bulbulia, Richard ;
Rahimi, Kazem ;
Haynes, Richard ;
Parish, Sarah ;
Peto, Richard ;
Collins, Rory ;
Meade, T. ;
Sleight, P. ;
Collins, R. ;
Armitage, J. ;
Bowman, L. ;
Parish, S. ;
Peto, R. ;
Barton, J. ;
Bray, C. ;
Wincott, E. ;
Dayanandan, R. ;
Clarke, R. ;
Graham, I. ;
Simpson, D. ;
Warlow, C. ;
Wilken, D. ;
Tobert, J. ;
Mushner, T. ;
Doll, R. ;
Wilhelmsen, L. ;
Fox, K. ;
Hill, C. ;
Sandercock, P. ;
Webster, J. ;
Henderson, J. ;
Nixon, A. ;
Lackie, S. ;
Thompson, J. ;
Brown, M. ;
Blackwood, S. ;
Morgan, M. ;
Rhoden, W. ;
Saeed, B. ;
Houghton, M. ;
Nicholson, A. ;
Simpson, C. ;
Hoburn, B. ;
Cooper, I. ;
Gallivan, A. ;
Pickerell, E. ;
Hancock, J. .
LANCET, 2010, 376 (9753) :1658-1669
[4]  
Center for Drug Evaluation Research, 2019, QUEST ANSW FDAS ADV QUEST ANSW FDAS ADV
[5]   Overcoming barriers to NLP for clinical text: the role of shared tasks and the need for additional creative solutions [J].
Chapman, Wendy W. ;
Nadkarni, Prakash M. ;
Hirschman, Lynette ;
D'Avolio, Leonard W. ;
Savova, Guergana K. ;
Uzuner, Ozlem .
JOURNAL OF THE AMERICAN MEDICAL INFORMATICS ASSOCIATION, 2011, 18 (05) :540-543
[6]   Systematic comparison of phenome-wide association study of electronic medical record data and genome-wide association study data [J].
Denny, Joshua C. ;
Bastarache, Lisa ;
Ritchie, Marylyn D. ;
Carroll, Robert J. ;
Zink, Raquel ;
Mosley, Jonathan D. ;
Field, Julie R. ;
Pulley, Jill M. ;
Ramirez, Andrea H. ;
Bowton, Erica ;
Basford, Melissa A. ;
Carrell, David S. ;
Peissig, Peggy L. ;
Kho, Abel N. ;
Pacheco, Jennifer A. ;
Rasmussen, Luke V. ;
Crosslin, David R. ;
Crane, Paul K. ;
Pathak, Jyotishman ;
Bielinski, Suzette J. ;
Pendergrass, Sarah A. ;
Xu, Hua ;
Hindorff, Lucia A. ;
Li, Rongling ;
Manolio, Teri A. ;
Chute, Christopher G. ;
Chisholm, Rex L. ;
Larson, Eric B. ;
Jarvik, Gail P. ;
Brilliant, Murray H. ;
McCarty, Catherine A. ;
Kullo, Iftikhar J. ;
Haines, Jonathan L. ;
Crawford, Dana C. ;
Masys, Daniel R. ;
Roden, Dan M. .
NATURE BIOTECHNOLOGY, 2013, 31 (12) :1102-+
[7]   Antihypertensive Effect Of Amlodipine In Co-Administration With Omeprazole In Patients With Hypertension And Acid-Related Disorders: Cytochrome P450-Associated Aspects [J].
Dorofeeva, Margarita N. ;
Shikh, Evgenia, V ;
Sizova, Zhanna M. ;
Tarasenko, Alisa, V ;
Denisenko, Natalia P. ;
Smirnov, Valeriy V. ;
Ryzhikova, Kristina A. ;
Sozaeva, Zhannet A. ;
Grishina, Elena A. ;
Sychev, Dmitriy A. .
PHARMACOGENOMICS & PERSONALIZED MEDICINE, 2019, 12 :329-338
[8]   THE COMBINATION OF PRAZOSIN AND VERAPAMIL IN THE TREATMENT OF ESSENTIAL-HYPERTENSION [J].
ELLIOTT, HL ;
MEREDITH, PA ;
CAMPBELL, L ;
REID, JL .
CLINICAL PHARMACOLOGY & THERAPEUTICS, 1988, 43 (05) :554-560
[9]   Comparison of three commercial knowledge bases for detection of drug-drug interactions in clinical decision support [J].
Fung, Kin Wah ;
Kapusnik-Uner, Joan ;
Cunningham, Jean ;
Higby-Baker, Stefanie ;
Bodenreider, Olivier .
JOURNAL OF THE AMERICAN MEDICAL INFORMATICS ASSOCIATION, 2017, 24 (04) :806-812
[10]   Testing the face validity and inter-rater agreement of a simple approach to drug-drug interaction evidence assessment [J].
Grizzle, Amy J. ;
Hines, Lisa E. ;
Malone, Daniel C. ;
Kravchenko, Olga ;
Hochheiser, Harry ;
Boyce, Richard D. .
JOURNAL OF BIOMEDICAL INFORMATICS, 2020, 101