High-throughput synthetic rescue for exhaustive characterization of suppressor mutations in human genes

被引:3
|
作者
Kobaisi, Farah [1 ,2 ,3 ]
Fayyad, Nour [3 ]
Sulpice, Eric [1 ]
Badran, Bassam [2 ]
Fayyad-Kazan, Hussein [2 ]
Rachidi, Walid [3 ]
Gidrol, Xavier [1 ]
机构
[1] Univ Grenoble Alpes, INSERM, CEA, IRIG BGE U1038, F-38000 Grenoble, France
[2] Lebanese Univ, Fac Sci 1, Lab Canc Biol & Mol Immunol, Hadath, Lebanon
[3] Univ Grenoble Alpes, SYMMES CIBEST UMR 5819 UGA CNRS CEA, IRIG CEA Grenoble, Grenoble, France
关键词
Suppressor mutation; Genetic screening; Cell phenotype; Synthetic rescue; PROTEIN-PROTEIN INTERACTIONS; ALLELE-SPECIFIC SUPPRESSION; CAENORHABDITIS-ELEGANS; INFORMATIONAL SUPPRESSION; NONSENSE MUTATIONS; RNA INTERFERENCE; CANCER; SCREEN; CELLS; YEAST;
D O I
10.1007/s00018-020-03519-6
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
Inherited or acquired mutations can lead to pathological outcomes. However, in a process defined as synthetic rescue, phenotypic outcome created by primary mutation is alleviated by suppressor mutations. An exhaustive characterization of these mutations in humans is extremely valuable to better comprehend why patients carrying the same detrimental mutation exhibit different pathological outcomes or different responses to treatment. Here, we first review all known suppressor mutations' mechanisms characterized by genetic screens on model species like yeast or flies. However, human suppressor mutations are scarce, despite some being discovered based on orthologue genes. Because of recent advances in high-throughput screening, developing an inventory of human suppressor mutations for pathological processes seems achievable. In addition, we review several screening methods for suppressor mutations in cultured human cells through knock-out, knock-down or random mutagenesis screens on large scale. We provide examples of studies published over the past years that opened new therapeutic avenues, particularly in oncology.
引用
收藏
页码:4209 / 4222
页数:14
相关论文
共 50 条
  • [21] High-Throughput Sequencing Identifies 3 Novel Susceptibility Genes for Hereditary Melanoma
    Campos, Catarina
    Fragoso, Sofia
    Luis, Rafael
    Pinto, Filipe
    Brito, Cheila
    Esteves, Susana
    Pataco, Margarida
    Santos, Sidonia
    Machado, Patricia
    Vicente, Joao B.
    Rosa, Joaninha Costa
    Cavaco, Branca M.
    Moura, Cecilia
    Pojo, Marta
    GENES, 2020, 11 (04)
  • [22] A platform for high-throughput bioenergy production phenotype characterization in single cells
    Kelbauskas, Laimonas
    Glenn, Honor
    Anderson, Clifford
    Messner, Jacob
    Lee, Kristen B.
    Song, Ganquan
    Houkal, Jeff
    Su, Fengyu
    Zhang, Liqiang
    Tian, Yanqing
    Wang, Hong
    Bussey, Kimberly
    Johnson, Roger H.
    Meldrum, Deirdre R.
    SCIENTIFIC REPORTS, 2017, 7
  • [23] High-Throughput Mutation Profiling Identifies Frequent Somatic Mutations in Advanced Gastric Adenocarcinoma
    Lee, Jeeyun
    van Hummelen, Paul
    Go, Christina
    Palescandolo, Emanuele
    Jang, Jiryeon
    Park, Ha Young
    Kang, So Young
    Park, Joon Oh
    Kang, Won Ki
    MacConaill, Laura
    Kim, Kyoung-Mee
    PLOS ONE, 2012, 7 (06):
  • [24] High-Throughput Characterization of Region-Specific Mitochondrial Function and Morphology
    Daniele, Joseph R.
    Esping, Daniel J.
    Garcia, Gilbert
    Parsons, Lee S.
    Arriaga, Edgar A.
    Dillin, Andrew
    SCIENTIFIC REPORTS, 2017, 7
  • [25] Flow cytometry-based high-throughput screening of synthetic peptides for palladium adsorption
    Tan, Ling
    Liu, Meizi
    Wang, Lixian
    Zhao, Guoping
    Zhang, Yanfei
    JOURNAL OF HAZARDOUS MATERIALS, 2024, 461
  • [26] Quantitative high-throughput analysis of synthetic genetic interactions in Caenorhabditis elegans by RNA interference
    Fortunato, Angelo
    GENOMICS, 2009, 93 (04) : 392 - 396
  • [27] High-throughput screens identify a lipid nanoparticle that preferentially delivers mRNA to human tumors in vivo
    Huayamares, Sebastian G.
    Lokugamage, Melissa P.
    Rab, Regina
    Sanchez, Alejandro J. Da Silva
    Kim, Hyejin
    Radmand, Afsane
    Loughrey, David
    Lian, Liming
    Hou, Yuning
    Achyut, Bhagelu R.
    Ehrhardt, Annette
    Hong, Jeong S.
    Sago, Cory D.
    Paunovska, Kalina
    Echeverri, Elisa Schrader
    Vanover, Daryll
    Santangelo, Philip J.
    Sorscher, Eric J.
    Dahlman, James E.
    JOURNAL OF CONTROLLED RELEASE, 2023, 357 : 394 - 403
  • [28] A high-throughput, computational system to predict if environmental contaminants can bind to human nuclear receptors
    Wang, Xiaoxiang
    Zhang, Xiaowei
    Xia, Pu
    Zhang, Junjiang
    Wang, Yuting
    Zhang, Rui
    Giesy, John P.
    Shi, Wei
    Yu, Hongxia
    SCIENCE OF THE TOTAL ENVIRONMENT, 2017, 576 : 609 - 616
  • [29] High-throughput sequencing reveals hub genes for human early embryonic development arrest in vitro fertilization: a pilot study
    Zhang, Wuwen
    Li, Kai
    Li, Shifeng
    Lv, Rong
    Ma, Jie
    Yin, Ping
    Li, Li
    Sun, Ningyu
    Chen, Yuanyuan
    Lu, Lu
    Li, Yun
    Zhang, Qinhua
    Yan, Hua
    FRONTIERS IN PHYSIOLOGY, 2023, 14
  • [30] Identification of Genes That Promote or Antagonize Somatic Homolog Pairing Using a High-Throughput FISH-Based Screen
    Joyce, Eric F.
    Williams, Benjamin R.
    Xie, Tiao
    Wu, C. -ting
    PLOS GENETICS, 2012, 8 (05):