A cuproptosis-related lncRNA signature identified prognosis and tumour immune microenvironment in kidney renal clear cell carcinoma

被引:12
|
作者
Xin, Sheng [1 ,2 ]
Mao, Jiaquan [1 ,2 ]
Cui, Kai [1 ,2 ]
Li, Qian [3 ]
Chen, Liang [1 ,2 ]
Li, Qinyu [1 ,2 ]
Tu, Bocheng [1 ,2 ]
Liu, Xiaming [1 ,2 ]
Wang, Tao [1 ,2 ]
Wang, Shaogang [1 ,2 ]
Liu, Jihong [1 ,2 ]
Song, Xiaodong [1 ,2 ]
Song, Wen [1 ,2 ]
机构
[1] Huazhong Univ Sci & Technol, Tongji Hosp, Tongji Med Coll, Dept Urol, Wuhan, Peoples R China
[2] Huazhong Univ Sci & Technol, Tongji Hosp, Inst Urol, Tongji Med Coll, Wuhan, Peoples R China
[3] Huazhong Univ Sci & Technol, Tongji Hosp, Tongji Med Coll, Dept Orthoped, Wuhan, Peoples R China
基金
中国国家自然科学基金;
关键词
kidney renal clear cell carcinoma; cuproptosis; lncRNAs; prognostic signature; tumor immune microenvironment; OXIDATIVE STRESS; CANCER; IMMUNOTHERAPY; INFLAMMATION; LINC01605; LANDSCAPE; APOPTOSIS; MIGRATION; BIOMARKER; DYNAMICS;
D O I
10.3389/fmolb.2022.974722
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
Kidney renal clear cell carcinoma (KIRC) is a heterogeneous malignant tumor with high incidence, metastasis, and mortality. The imbalance of copper homeostasis can produce cytotoxicity and cause cell damage. At the same time, copper can also induce tumor cell death and inhibit tumor transformation. The latest research found that this copper-induced cell death is different from the known cell death pathway, so it is defined as cuproptosis. We included 539 KIRC samples and 72 normal tissues from the Cancer Genome Atlas (TCGA) in our study. After identifying long non-coding RNAs (lncRNAs) significantly associated with cuproptosis, we clustered 526 KIRC samples based on the prognostic lncRNAs and obtained two different patterns (Cuproptosis.C1 and C2). C1 indicated an obviously worse prognostic outcome and possessed a higher immune score and immune cell infiltration level. Moreover, a prognosis signature (CRGscore) was constructed to effectively and accurately evaluate the overall survival (OS) of KIRC patients. There were significant differences in tumor immune microenvironment (TIME) and tumor mutation burden (TMB) between CRGscore-defined groups. CRGscore also has the potential to predict medicine efficacy.
引用
收藏
页数:19
相关论文
共 50 条
  • [31] Identification and Validation of Cuproptosis-Related LncRNA Signatures in the Prognosis and Immunotherapy of Clear Cell Renal Cell Carcinoma Using Machine Learning
    Bai, Zhixun
    Lu, Jing
    Chen, Anjian
    Zheng, Xiang
    Wu, Mingsong
    Tan, Zhouke
    Xie, Jian
    BIOMOLECULES, 2022, 12 (12)
  • [32] Construction and validation of a cuproptosis-related lncRNA prognosis signature in bladder carcinoma
    Song, Jinbo
    Sun, Xiaoke
    Wang, Ting
    Yan, Li
    Su, Pengxiao
    Yuan, Leihong
    JOURNAL OF CANCER RESEARCH AND CLINICAL ONCOLOGY, 2023, 149 (13) : 11207 - 11221
  • [33] Construction and validation of a cuproptosis-related lncRNA prognosis signature in bladder carcinoma
    Jinbo Song
    Xiaoke Sun
    Ting Wang
    Li Yan
    Pengxiao Su
    Leihong Yuan
    Journal of Cancer Research and Clinical Oncology, 2023, 149 : 11207 - 11221
  • [34] Construction of a Necroptosis-Related lncRNA Signature for Predicting Prognosis and Immune Response in Kidney Renal Clear Cell Carcinoma
    Zhang, Yue
    Zhuang, Tongtian
    Xin, Zhenlong
    Sun, Changjian
    Li, Deyang
    Ma, Nan
    Wang, Xiaoyan
    Wang, Xuning
    CELLS, 2023, 12 (01)
  • [35] Clinical significance and immune landscape of cuproptosis-related lncRNAs in kidney renal clear cell carcinoma: a bioinformatical analysis
    Li, Ding
    Wu, Xuan
    Song, Wenping
    Cheng, Cheng
    Hao, Lidan
    Zhang, Wenzhou
    ANNALS OF TRANSLATIONAL MEDICINE, 2022, 10 (22)
  • [36] Prediction of immune infiltration and prognosis for patients with cholangiocarcinoma based on a cuproptosis-related lncRNA signature
    Yao, Hong-Fei
    He, Min
    Zhu, Yu-Heng
    Zhang, Bo
    Chen, Peng-Cheng
    Huo, Yan-Miao
    Zhang, Jun-Feng
    Yang, Chao
    HELIYON, 2024, 10 (01)
  • [37] The signature of cuproptosis-related immune genes predicts the tumor microenvironment and prognosis of prostate adenocarcinoma
    Yao, Kai
    Zhang, Rumeng
    Li, Liang
    Liu, Mingdong
    Feng, Shiyao
    Yan, Haixin
    Zhang, Zhihui
    Xie, Dongdong
    FRONTIERS IN IMMUNOLOGY, 2023, 14
  • [38] A novel cuproptosis-related gene signature of prognosis and immune microenvironment in head and neck squamous cell carcinoma cancer
    Jiang, Xu
    Ke, Jing
    Jia, Lifeng
    An, Xiang
    Ma, Haiyu
    Li, Zhongwan
    Yuan, Wei
    JOURNAL OF CANCER RESEARCH AND CLINICAL ONCOLOGY, 2023, 149 (01) : 203 - 218
  • [39] A novel cuproptosis-related gene signature of prognosis and immune microenvironment in head and neck squamous cell carcinoma cancer
    Xu Jiang
    Jing Ke
    Lifeng Jia
    Xiang An
    Haiyu Ma
    Zhongwan Li
    Wei Yuan
    Journal of Cancer Research and Clinical Oncology, 2023, 149 : 203 - 218
  • [40] Construction of a Lactate-Related Prognostic Signature for Predicting Prognosis, Tumor Microenvironment, and Immune Response in Kidney Renal Clear Cell Carcinoma
    Sun, Zhuolun
    Tao, Wen
    Guo, Xudong
    Jing, Changying
    Zhang, Mingxiao
    Wang, Zhenqing
    Kong, Feng
    Suo, Ning
    Jiang, Shaobo
    Wang, Hanbo
    FRONTIERS IN IMMUNOLOGY, 2022, 13