A cuproptosis-related lncRNA signature identified prognosis and tumour immune microenvironment in kidney renal clear cell carcinoma

被引:14
作者
Xin, Sheng [1 ,2 ]
Mao, Jiaquan [1 ,2 ]
Cui, Kai [1 ,2 ]
Li, Qian [3 ]
Chen, Liang [1 ,2 ]
Li, Qinyu [1 ,2 ]
Tu, Bocheng [1 ,2 ]
Liu, Xiaming [1 ,2 ]
Wang, Tao [1 ,2 ]
Wang, Shaogang [1 ,2 ]
Liu, Jihong [1 ,2 ]
Song, Xiaodong [1 ,2 ]
Song, Wen [1 ,2 ]
机构
[1] Huazhong Univ Sci & Technol, Tongji Hosp, Tongji Med Coll, Dept Urol, Wuhan, Peoples R China
[2] Huazhong Univ Sci & Technol, Tongji Hosp, Inst Urol, Tongji Med Coll, Wuhan, Peoples R China
[3] Huazhong Univ Sci & Technol, Tongji Hosp, Tongji Med Coll, Dept Orthoped, Wuhan, Peoples R China
基金
中国国家自然科学基金;
关键词
kidney renal clear cell carcinoma; cuproptosis; lncRNAs; prognostic signature; tumor immune microenvironment; OXIDATIVE STRESS; CANCER; IMMUNOTHERAPY; INFLAMMATION; LINC01605; LANDSCAPE; APOPTOSIS; MIGRATION; BIOMARKER; DYNAMICS;
D O I
10.3389/fmolb.2022.974722
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
Kidney renal clear cell carcinoma (KIRC) is a heterogeneous malignant tumor with high incidence, metastasis, and mortality. The imbalance of copper homeostasis can produce cytotoxicity and cause cell damage. At the same time, copper can also induce tumor cell death and inhibit tumor transformation. The latest research found that this copper-induced cell death is different from the known cell death pathway, so it is defined as cuproptosis. We included 539 KIRC samples and 72 normal tissues from the Cancer Genome Atlas (TCGA) in our study. After identifying long non-coding RNAs (lncRNAs) significantly associated with cuproptosis, we clustered 526 KIRC samples based on the prognostic lncRNAs and obtained two different patterns (Cuproptosis.C1 and C2). C1 indicated an obviously worse prognostic outcome and possessed a higher immune score and immune cell infiltration level. Moreover, a prognosis signature (CRGscore) was constructed to effectively and accurately evaluate the overall survival (OS) of KIRC patients. There were significant differences in tumor immune microenvironment (TIME) and tumor mutation burden (TMB) between CRGscore-defined groups. CRGscore also has the potential to predict medicine efficacy.
引用
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页数:19
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共 74 条
[1]   Current and emerging therapies for first-line treatment of metastatic clear cell renal cell carcinoma [J].
Atkins, Michael B. ;
Tannir, Nizar M. .
CANCER TREATMENT REVIEWS, 2018, 70 :127-137
[2]   Cell apoptosis induced by ciprofloxacin based Cu(II) complexes: cytotoxicity, SOD mimic and antibacterial studies [J].
Bhatt, Bhupesh S. ;
Gandhi, Divyang H. ;
Vaidya, Foram U. ;
Pathak, Chandramani ;
Patel, Tushar N. .
JOURNAL OF BIOMOLECULAR STRUCTURE & DYNAMICS, 2021, 39 (12) :4555-4562
[3]   A Novel Cuproptosis-Related Prognostic Gene Signature and Validation of Differential Expression in Clear Cell Renal Cell Carcinoma [J].
Bian, Zilong ;
Fan, Rong ;
Xie, Lingmin .
GENES, 2022, 13 (05)
[4]   Spatiotemporal Dynamics of Intratumoral Immune Cells Reveal the Immune Landscape in Human Cancer [J].
Bindea, Gabriela ;
Mlecnik, Bernhard ;
Tosolini, Marie ;
Kirilovsky, Amos ;
Waldner, Maximilian ;
Obenauf, Anna C. ;
Angell, Helen ;
Fredriksen, Tessa ;
Lafontaine, Lucie ;
Berger, Anne ;
Bruneval, Patrick ;
Fridman, Wolf Herman ;
Becker, Christoph ;
Pages, Franck ;
Speicher, Michael R. ;
Trajanoski, Zlatko ;
Galon, Jerome .
IMMUNITY, 2013, 39 (04) :782-795
[5]   LNCcation: lncRNA localization and function [J].
Bridges, Mary Catherine ;
Daulagala, Amanda C. ;
Kourtidis, Antonis .
JOURNAL OF CELL BIOLOGY, 2021, 220 (02)
[6]   Renal cancer [J].
Capitanio, Umberto ;
Montorsi, Francesco .
LANCET, 2016, 387 (10021) :894-906
[7]   Development of tumor mutation burden as an immunotherapy biomarker: utility for the oncology clinic [J].
Chan, T. A. ;
Yarchoan, M. ;
Jaffee, E. ;
Swanton, C. ;
Quezada, S. A. ;
Stenzinger, A. ;
Peters, S. .
ANNALS OF ONCOLOGY, 2019, 30 (01) :44-56
[8]   Pan-cancer Immunogenomic Analyses Reveal Genotype-Immunophenotype Relationships and Predictors of Response to Checkpoint Blockade [J].
Charoentong, Pornpimol ;
Finotello, Francesca ;
Angelova, Mihaela ;
Mayer, Clemens ;
Efremova, Mirjana ;
Rieder, Dietmar ;
Hackl, Hubert ;
Trajanoski, Zlatko .
CELL REPORTS, 2017, 18 (01) :248-262
[9]   High-dose copper activates p53-independent apoptosis through the induction of nucleolar stress in human cell lines [J].
Chen, Chieh-Hsin ;
Chou, Yi-Ting ;
Yang, Ya-Wen ;
Lo, Kai-Yin .
APOPTOSIS, 2021, 26 (11-12) :612-627
[10]   Eosinophils and Cancer [J].
Davis, Benjamin P. ;
Rothenberg, Marc E. .
CANCER IMMUNOLOGY RESEARCH, 2014, 2 (01) :1-8