The Flexibility of Oligosaccharides Unveiled Through Residual Dipolar Coupling Analysis

被引:10
|
作者
Poveda, Ana [1 ]
Fittolani, Giulio [2 ,3 ]
Seeberger, Peter H. [2 ,3 ]
Delbianco, Martina [2 ]
Jimenez-Barbero, Jesus [1 ,4 ,5 ,6 ]
机构
[1] CICbioGUNE, Basque Res & Technol Alliance BRTA, Derio, Spain
[2] Max Planck Inst Colloids & Interfaces, Dept Biomol Syst, Potsdam, Germany
[3] Free Univ Berlin, Dept Chem & Biochem, Berlin, Germany
[4] Basque Fdn Sci, Ikerbasque, Bilbao, Spain
[5] Univ Basque Country, Fac Sci & Technol, EHU UPV, Dept Organ Chem 2, Leioa, Spain
[6] Ctr Invest Biomed Red Enfermedades Resp, Madrid, Spain
基金
欧洲研究理事会;
关键词
glycans; NMR; RDC; 13C-labelling; automated glycan assembly; STRUCTURE ELUCIDATION; NMR; ALIGNMENT; GLYCANS;
D O I
10.3389/fmolb.2021.784318
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
The intrinsic flexibility of glycans complicates the study of their structures and dynamics, which are often important for their biological function. NMR has provided insights into the conformational, dynamic and recognition features of glycans, but suffers from severe chemical shift degeneracy. We employed labelled glycans to explore the conformational behaviour of a beta(1-6)-Glc hexasaccharide model through residual dipolar couplings (RDCs). RDC delivered information on the relative orientation of specific residues along the glycan chain and provided experimental clues for the existence of certain geometries. The use of two different aligning media demonstrated the adaptability of flexible oligosaccharide structures to different environments.
引用
收藏
页数:9
相关论文
共 50 条
  • [1] REDCAT: a residual dipolar coupling analysis tool
    Valafar, H
    Prestegard, JH
    JOURNAL OF MAGNETIC RESONANCE, 2004, 167 (02) : 228 - 241
  • [2] The combination of molecular modeling with residual dipolar coupling in NMR spectroscopy for conformations of complex oligosaccharides.
    Bush, CA
    ABSTRACTS OF PAPERS OF THE AMERICAN CHEMICAL SOCIETY, 2002, 223 : U502 - U502
  • [3] Protein fold recognition through application of residual dipolar coupling data
    Qu, Y
    Guo, JT
    Olman, V
    Xu, Y
    PACIFIC SYMPOSIUM ON BIOCOMPUTING 2004, 2003, : 459 - 470
  • [4] Spatial structure of triglycine determined by the residual dipolar coupling analysis
    V. V. Klochkov
    B. I. Khairutdinov
    A. V. Klochkov
    V. G. Shtyrlin
    R. A. Shaykhutdinov
    Applied Magnetic Resonance, 2003, 25 : 113 - 119
  • [5] Spatial structure of triglycine determined by the residual dipolar coupling analysis
    Klochkov, VV
    Khairutdinov, BI
    Klochkov, AV
    Shtyrlin, VG
    Shaykhutdinov, RA
    APPLIED MAGNETIC RESONANCE, 2003, 25 (01) : 113 - 119
  • [6] Determination of the spatial structure of glutathione by residual dipolar coupling analysis
    Klochkov, AV
    Khairutdinov, BI
    Tagirov, MS
    Klochkov, VV
    MAGNETIC RESONANCE IN CHEMISTRY, 2005, 43 (11) : 948 - 951
  • [7] Structural and dynamic analysis of residual dipolar coupling data for proteins
    Tolman, JR
    Al-Hashimi, HM
    Kay, LE
    Prestegard, JH
    JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 2001, 123 (07) : 1416 - 1424
  • [8] Refinement of the structure of protein–RNA complexes by residual dipolar coupling analysis
    Peter Bayer
    Luca Varani
    Gabriele Varani
    Journal of Biomolecular NMR, 1999, 14 : 149 - 155
  • [9] Periodicity, planarity, residual dipolar coupling, and structures
    Walsh, JD
    Wang, YX
    JOURNAL OF MAGNETIC RESONANCE, 2005, 174 (01) : 152 - 162
  • [10] The use of residual dipolar coupling for conformational analysis of structurally related natural products
    Lancefield, Christopher S.
    Slawin, Alexandra M. Z.
    Westwood, Nicholas J.
    Lebl, Tomas
    MAGNETIC RESONANCE IN CHEMISTRY, 2015, 53 (06) : 467 - 475