Evaluation of the QIAstat-Dx RP2.0 and the BioFire FilmArray RP2.1 for the Rapid Detection of Respiratory Pathogens Including SARS-CoV-2

被引:13
作者
Cassidy, Hayley [1 ]
van Genne, Mart [1 ]
Lizarazo-Forero, Erley [1 ]
Niesters, Hubert G. M. [1 ]
Gard, Lilli [1 ]
机构
[1] Univ Groningen, Univ Med Ctr Groningen, Dept Med Microbiol & Infect Prevent, Div Clin Virol, Groningen, Netherlands
基金
欧盟地平线“2020”;
关键词
QIAstat-Dx; BioFire FilmArray; molecular diagnostics; respiratory infections; syndromic testing; point-of-care (POC); SARS-CoV-2; INFECTION;
D O I
10.3389/fmicb.2022.854209
中图分类号
Q93 [微生物学];
学科分类号
071005 ; 100705 ;
摘要
Point-of-care syndromic panels allow for simultaneous and rapid detection of respiratory pathogens from nasopharyngeal swabs. The clinical performance of the QIAstat-Dx Respiratory SARS-CoV-2 panel RP2.0 (QIAstat-Dx RP2.0) and the BioFire FilmArray Respiratory panel RP2.1 (BioFire RP2.1) was evaluated for the detection of SARS-CoV-2 and other common respiratory pathogens. A total of 137 patient samples were retrospectively selected based on emergency department admission, along with 33 SARS-CoV-2 positive samples tested using a WHO laboratory developed test. The limit of detection for SARS-CoV-2 was initially evaluated for both platforms. The QIAstat-Dx RP2.0 detected SARS-CoV-2 at 500 copies/mL and had a positive percent agreement (PPA) of 85%. The BioFire RP2.1 detected SARS-CoV-2 at 50 copies/mL and had a PPA of 97%. Both platforms showed a negative percent agreement of 100% for SARS-CoV-2. Evaluation of analytical specificity from a range of common respiratory targets showed a similar performance between each platform. The QIAstat-Dx RP2.0 had an overall PPA of 82% (67-100%) in clinical samples, with differences in sensitivity depending on the respiratory target. Both platforms can be used to detect acute cases of SARS-CoV-2. While the QIAstat-Dx RP2.0 is suitable for detecting respiratory viruses within a clinical range, it has less analytical and clinical sensitivity for SARS-CoV-2 compared to the BioFire RP2.1.
引用
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页数:9
相关论文
共 31 条
[1]   Point-of-care diagnostics for respiratory viral infections [J].
Basile, Kerri ;
Kok, Jen ;
Dwyer, Dominic E. .
EXPERT REVIEW OF MOLECULAR DIAGNOSTICS, 2018, 18 (01) :75-83
[2]   Space-time analysis of pneumonia hospitalisations in the Netherlands [J].
Beninca, Elisa ;
van Boven, Michiel ;
Hagenaars, Thomas ;
van der Hoek, Wim .
PLOS ONE, 2017, 12 (07)
[3]   Performance of the QIAstat-Dx Gastrointestinal Panel for Diagnosing Infectious Gastroenteritis [J].
Boers, Stefan A. ;
Peters, Cas J. A. ;
Wessels, Els ;
Melchers, Willem J. G. ;
Claas, Eric C. J. .
JOURNAL OF CLINICAL MICROBIOLOGY, 2020, 58 (03)
[4]   Detection of 2019 novel coronavirus (2019-nCoV) by real-time RT-PCR (Publication with Expression of Concern) [J].
Corman, Victor M. ;
Landt, Olfert ;
Kaiser, Marco ;
Molenkamp, Richard ;
Meijer, Adam ;
Chu, Daniel K. W. ;
Bleicker, Tobias ;
Bruenink, Sebastian ;
Schneider, Julia ;
Schmidt, Marie Luisa ;
Mulders, Daphne G. J. C. ;
Haagmans, Bart L. ;
van der Veer, Bas ;
van den Brink, Sharon ;
Wijsman, Lisa ;
Goderski, Gabriel ;
Romette, Jean-Louis ;
Ellis, Joanna ;
Zambon, Maria ;
Peiris, Malik ;
Goossens, Herman ;
Reusken, Chantal ;
Koopmans, Marion P. G. ;
Drosten, Christian .
EUROSURVEILLANCE, 2020, 25 (03) :23-30
[5]   Clinical evaluation of the BioFire® Respiratory Panel 2.1 and detection of SARS-CoV-2 [J].
Creager, Hannah M. ;
Cabrera, Barbara ;
Schnaubelt, Andy ;
Cox, Jesse L. ;
Cushman-Vokoun, Allison M. ;
Shakir, Salika M. ;
Tardif, Keith D. ;
Huang, Meei-Li ;
Jerome, Keith R. ;
Greninger, Alexander L. ;
Drobysheva, Daria ;
Spaulding, Usha ;
Rogatcheva, Margarita ;
Bourzac, Kevin M. ;
Hinrichs, S. H. ;
Broadhurst, M. J. ;
Fey, P. D. .
JOURNAL OF CLINICAL VIROLOGY, 2020, 129
[6]   An integrated stewardship model: antimicrobial, infection prevention and diagnostic (AID) [J].
Dik, Jan-Willem H. ;
Poelman, Randy ;
Friedrich, Alexander W. ;
Panday, Prashant Nannan ;
Lo-Ten-Foe, Jerome R. ;
van Assen, Sander ;
van Gemert-Pijnen, Julia E. W. C. ;
Niesters, Hubert G. M. ;
Hendrix, Ron ;
Sinha, Bhanu .
FUTURE MICROBIOLOGY, 2016, 11 (01) :93-102
[7]   Evaluation of the BioFire® COVID-19 test and Respiratory Panel 2.1 for rapid identification of SARS-CoV-2 in nasopharyngeal swab samples [J].
Eckbo, Eric J. ;
Locher, Kerstin ;
Caza, Melissa ;
Li, Lisa ;
Lavergne, Valery ;
Charles, Marthe .
DIAGNOSTIC MICROBIOLOGY AND INFECTIOUS DISEASE, 2021, 99 (03)
[8]  
Fischer S.A., 2016, Transplant Infections, P911, DOI [10.1007/978-3-319-28797-3_49, DOI 10.1007/978-3-319-28797-349]
[9]   Association of the CT values of real-time PCR of viral upper respiratory tract infection with clinical severity, Kenya [J].
Fuller, James A. ;
Njenga, M. Kariuki ;
Bigogo, Godfrey ;
Aura, Barrack ;
Ope, Maurice O. ;
Nderitu, Leonard ;
Wakhule, Lilian ;
Erdman, Dean D. ;
Breiman, Robert F. ;
Feikin, Daniel R. .
JOURNAL OF MEDICAL VIROLOGY, 2013, 85 (05) :924-932
[10]   Validation and verification of the GeneFinder™ COVID-19 Plus RealAmp kit on the ELITe InGenius® instrument [J].
Gard, L. ;
Fliss, M. A. ;
Bosma, F. ;
ter Veen, D. ;
Niesters, H. G. M. .
JOURNAL OF VIROLOGICAL METHODS, 2022, 300