Extraction of Reduced Infrared Biomarker Signatures for the Stratification of Patients Affected by Parkinson's Disease: An Untargeted Metabolomic Approach

被引:2
作者
Tkachenko, Kateryna [1 ]
Espinosa, Maria [1 ]
Esteban-Diez, Isabel [1 ]
Gonzalez-Saiz, Jose M. [1 ]
Pizarro, Consuelo [1 ]
机构
[1] Univ La Rioja, Dept Chem, Logrono 26006, Spain
关键词
untargeted metabolomics; Parkinson's disease; patient stratification; health and wellbeing monitoring; metabolic signatures; FTIR; chemometrics; classification strategy; CEREBROSPINAL-FLUID; DIAGNOSIS; ALZHEIMERS; CLASSIFICATION; SPECTROSCOPY; PATHOGENESIS; PLASMA; SYSTEM; SERUM;
D O I
10.3390/chemosensors10060229
中图分类号
O65 [分析化学];
学科分类号
070302 ; 081704 ;
摘要
An untargeted Fourier transform infrared (FTIR) metabolomic approach was employed to study metabolic changes and disarrangements, recorded as infrared signatures, in Parkinson's disease (PD). Herein, the principal aim was to propose an efficient sequential classification strategy based on SELECT-LDA, which enabled optimal stratification of three main categories: PD patients from subjects with Alzheimer's disease (AD) and healthy controls (HC). Moreover, sub-categories, such as PD at the early stage (PDI) from PD in the advanced stage (PDD), and PDD vs. AD, were stratified. Every classification step with selected wavenumbers achieved 90.11% to 100% correct assignment rates in classification and internal validation. Therefore, selected metabolic signatures from new patients could be used as input features for screening and diagnostic purposes.
引用
收藏
页数:19
相关论文
共 59 条
[51]   A Critical Assessment of Exosomes in the Pathogenesis and Stratification of Parkinson's Disease [J].
Tofaris, George K. .
JOURNAL OF PARKINSONS DISEASE, 2017, 7 (04) :569-576
[52]   Correlations of Neuropsychological and Metabolic Brain Changes in Parkinson's Disease and Other α-Synucleinopathies [J].
Trost, Maja ;
Perovnik, Matej ;
Pirtosek, Zvezdan .
FRONTIERS IN NEUROLOGY, 2019, 10
[53]   A study of Parkinson's disease patients' serum using FTIR spectroscopy [J].
Wang, Xin ;
Wu, Qipeng ;
Li, Chao ;
Zhou, Yuan ;
Xu, Fangcheng ;
Zong, Ling ;
Ge, Shaolin .
INFRARED PHYSICS & TECHNOLOGY, 2020, 106
[54]  
Worsfold P.J., 1989, Anal. Chim. Acta, V225, DOI [10.1016/S0003-2670(00)84639-5, DOI 10.1016/S0003-2670(00)84639-5]
[55]   Joint analyses model for total cholesterol and triglyceride in human serum with near-infrared spectroscopy [J].
Yao, Lijun ;
Lyu, Ning ;
Chen, Jiemei ;
Pan, Tao ;
Yu, Jing .
SPECTROCHIMICA ACTA PART A-MOLECULAR AND BIOMOLECULAR SPECTROSCOPY, 2016, 159 :53-59
[56]   The significance of uric acid in the diagnosis and treatment of Parkinson disease: An updated systemic review [J].
Yu, Zhange ;
Zhang, Shuai ;
Wang, Dongdong ;
Fan, Meng ;
Gao, Fuqiang ;
Sun, Wei ;
Li, Zirong ;
Li, Shiliang .
MEDICINE, 2017, 96 (45)
[57]   Assessing Plasma Levels of Selenium, Copper, Iron and Zinc in Patients of Parkinson's Disease [J].
Zhao, Hai-Wen ;
Lin, Jie ;
Wang, Xue-Bao ;
Cheng, Xing ;
Wang, Jian-Yong ;
Hu, Bei-Lei ;
Zhang, Yan ;
Zhang, Xiong ;
Zhu, Jian-Hong .
PLOS ONE, 2013, 8 (12)
[58]   Neuroprotective effect of carnosine against salsolinol-induced Parkinson's disease [J].
Zhao, Jun ;
Shi, Lei ;
Zhang, Li-Rong .
EXPERIMENTAL AND THERAPEUTIC MEDICINE, 2017, 14 (01) :664-670
[59]   Level of uric acid and uric acid/creatinine ratios in correlation with stage of Parkinson disease [J].
Zhong, Ling-Ling ;
Song, Ya-Qi ;
Tian, Xiang-Yang ;
Cao, Hua ;
Ju, Ke-Ju .
MEDICINE, 2018, 97 (26)