Using approximate Bayesian computation to quantify cell-cell adhesion parameters in a cell migratory process

被引:21
|
作者
Ross, Robert J. H. [1 ]
Baker, R. E. [1 ]
Parker, Andrew [1 ]
Ford, M. J. [2 ]
Mort, R. L. [3 ]
Yates, C. A. [4 ]
机构
[1] Univ Oxford, Radcliffe Observ Quarter, Math Inst, Wolfson Ctr Math Biol, Woodstock Rd, Oxford OX2 6GG, England
[2] Univ Edinburgh, Western Gen Hosp, MRC Human Genet Unit, MRC IGMM, Edinburgh EH4 2XU, Midlothian, Scotland
[3] Univ Lancaster, Fac Hlth & Med, Div Biomed & Life Sci, Furness Bldg, Lancaster LA1 4YG, England
[4] Univ Bath, Ctr Math Biol, Dept Math Sci, Bath BA2 7AY, Avon, England
基金
英国工程与自然科学研究理事会;
关键词
MODEL; UNCERTAINTY; MECHANISMS; INFERENCE;
D O I
10.1038/s41540-017-0010-7
中图分类号
Q [生物科学];
学科分类号
07 ; 0710 ; 09 ;
摘要
In this work, we implement approximate Bayesian computational methods to improve the design of a wound-healing assay used to quantify cell-cell interactions. This is important as cell-cell interactions, such as adhesion and repulsion, have been shown to play a role in cell migration. Initially, we demonstrate with a model of an unrealistic experiment that we are able to identify model parameters that describe agent motility and adhesion, given we choose appropriate summary statistics for our model data. Following this, we replace our model of an unrealistic experiment with a model representative of a practically realisable experiment. We demonstrate that, given the current (and commonly used) experimental set-up, our model parameters cannot be accurately identified using approximate Bayesian computation methods. We compare new experimental designs through simulation, and show more accurate identification of model parameters is possible by expanding the size of the domain upon which the experiment is performed, as opposed to increasing the number of experimental replicates. The results presented in this work, therefore, describe time and cost-saving alterations for a commonly performed experiment for identifying cell motility parameters. Moreover, this work will be of interest to those concerned with performing experiments that allow for the accurate identification of parameters governing cell migratory processes, especially cell migratory processes in which cell-cell adhesion or repulsion are known to play a significant role.
引用
收藏
页数:10
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