Parallel prediction of protein-protein interactions using proximal SVM

被引：0
|
作者：
Chung, YJ [1 ]
Cho, SY
Shin, SY
机构：
[1] Hankuk Univ Foreign Studies, Comp Sci & Informat Commun Engn Div, Yongin, South Korea
[2] S Dakota State Univ, Dept Comp Sci, Brookings, SD 57007 USA
来源：
ROUGH SETS, FUZZY SETS, DATA MINING, AND GRANULAR COMPUTING, PT 2, PROCEEDINGS | 2005年 / 3642卷
关键词：
D O I：
暂无
中图分类号：
TP18 [人工智能理论];
学科分类号：
081104 ; 0812 ; 0835 ; 1405 ;
摘要：
In general, the interactions between proteins are fundamental to a broad area of biological functions. In this paper, we try to predict protein-protein interactions in parallel on a 12-node PC-cluster using domains of a protein. For this, we use a hydrophobicity among protein's amino acid's physicochemical feature and a support vector machine (SVM) among machine learning techniques. According to the experiments, we get approximately 60% average accuracy with 5 trials and we obtained an average speed-up of 5.11 with a 12-node cluster using a proximal SVM.
引用
收藏
页码：430 / 437
页数：8
相关论文
共 50 条
  • [1] Prediction of protein-protein interactions between viruses and human by an SVM model
    Cui, Guangyu
    Fang, Chao
    Han, Kyungsook
    BMC BIOINFORMATICS, 2012, 13
  • [2] Prediction of protein-protein interactions between viruses and human by an SVM model
    Guangyu Cui
    Chao Fang
    Kyungsook Han
    BMC Bioinformatics, 13
  • [3] Protein-Protein Interaction Prediction Using Single Class SVM
    Lei, Hairong
    Kniss, Joe Michael
    SEVENTH INTERNATIONAL CONFERENCE ON MACHINE LEARNING AND APPLICATIONS, PROCEEDINGS, 2008, : 883 - +
  • [4] Prediction of Protein-Protein Interactions Using Protein Signature Profiling
    Mahmood A.Mahdavi
    Yen-Han Lin
    Genomics Proteomics & Bioinformatics, 2007, (Z1) : 177 - 186
  • [5] Predicting protein-protein interactions from one feature using SVM
    Chung, Y
    Kim, GM
    Hwang, YS
    Park, H
    INNOVATIONS IN APPLIED ARTIFICIAL INTELLIGENCE, 2004, 3029 : 50 - 55
  • [6] A MapReduce based parallel SVM for large-scale predicting protein-protein interactions
    You, Zhu-Hong
    Yu, Jian-Zhong
    Zhu, Lin
    Li, Shuai
    Wen, Zhen-Kun
    NEUROCOMPUTING, 2014, 145 : 37 - 43
  • [7] Prediction of Protein-Protein Interactions Based on Protein-Protein Correlation Using Least Squares Regression
    Huang, De-Shuang
    Zhang, Lei
    Han, Kyungsook
    Deng, Suping
    Yang, Kai
    Zhang, Hongbo
    CURRENT PROTEIN & PEPTIDE SCIENCE, 2014, 15 (06) : 553 - 560
  • [8] Computational prediction of protein-protein interactions
    Skrabanek, Lucy
    Saini, Harpreet K.
    Bader, Gary D.
    Enright, Anton J.
    MOLECULAR BIOTECHNOLOGY, 2008, 38 (01) : 1 - 17
  • [9] Prediction and redesign of protein-protein interactions
    Lua, Rhonald C.
    Marciano, David C.
    Katsonis, Panagiotis
    Adikesavan, Anbu K.
    Wilkins, Angela D.
    Lichtarge, Olivier
    PROGRESS IN BIOPHYSICS & MOLECULAR BIOLOGY, 2014, 116 (2-3): : 194 - 202
  • [10] Prediction Protein-Protein Interactions with LSTM
    Tao, Zheng
    Yao, Jiahao
    Yuan, Chao
    Zhao, Ning
    Yang, Bin
    Chen, Baitong
    Bao, Wenzheng
    SIMULATION TOOLS AND TECHNIQUES, SIMUTOOLS 2021, 2022, 424 : 540 - 545
12345