Organa -: a program package for structure determination from powder diffraction data by direct-space methods

被引:39
作者
Brodski, V [1 ]
Peschar, R [1 ]
Schenk, H [1 ]
机构
[1] Univ Amsterdam, Fac Sci, Vant Hoff Inst Mol Sci, Crystallog Lab, NL-1018 WV Amsterdam, Netherlands
关键词
D O I
10.1107/S0021889805015876
中图分类号
O6 [化学];
学科分类号
0703 ;
摘要
A new software package has been developed, named Organa, for ab initio solution of crystal structures from powder diffraction data by direct-space methods. The package contains energy-guiding Monte Carlo and grid-search algorithms and is based on a combined global minimization of the R factor and a potential energy function of the system with the option of local minimization of the cost function for each generated trial structure. Basically, the potential energy function consists of van der Waals interactions, but harmonic potentials can be added to impose soft distance restraints. The program was successfully applied to the structure determination of a series of melamine phosphate compounds. The program is freely available ( for all Windows platforms) from the correspondence author upon request.
引用
收藏
页码:688 / 693
页数:6
相关论文
共 28 条
[1]   SIR92 - a program for automatic solution of crystal structures by direct methods [J].
ALTOMARE, A ;
CASCARANO, G ;
GIACOVAZZO, G ;
GUAGLIARDI, A ;
BURLA, MC ;
POLIDORI, G ;
CAMALLI, M .
JOURNAL OF APPLIED CRYSTALLOGRAPHY, 1994, 27 :435-435
[2]   A general Monte Carlo approach to structure solution from powder-diffraction data: Application to poly(ethylene oxide)(3):LiN(SO2CF3)(2) [J].
Andreev, YG ;
Lightfoot, P ;
Bruce, PG .
JOURNAL OF APPLIED CRYSTALLOGRAPHY, 1997, 30 :294-305
[3]   Structure of melaminium dihydrogenpyrophosphate and its formation from melaminium dihydrogenphosphate studied with powder diffraction data, solid-state NMR, and theoretical calculations [J].
Brodski, V ;
Peschar, R ;
Schenk, H ;
Brinkmann, A ;
van Eck, ERH ;
Kentgens, APM ;
Coussens, B ;
Braam, A .
JOURNAL OF PHYSICAL CHEMISTRY B, 2004, 108 (39) :15069-15076
[4]   A Monte Carlo approach to crystal structure determination from powder diffraction data [J].
Brodski, V ;
Peschar, R ;
Schenk, H .
JOURNAL OF APPLIED CRYSTALLOGRAPHY, 2003, 36 :239-243
[5]   A grid search procedure of positioning a known molecule in an unknown crystal structure with the use of powder diffraction data [J].
Chernyshev, VV ;
Schenk, H .
ZEITSCHRIFT FUR KRISTALLOGRAPHIE, 1998, 213 (01) :1-3
[6]   A guided simulated annealing method for crystallography [J].
Chou, CI ;
Lee, TK .
ACTA CRYSTALLOGRAPHICA A-FOUNDATION AND ADVANCES, 2002, 58 :42-46
[7]   Whole-profile structure solution from powder diffraction data using simulated annealing [J].
Coelho, AA .
JOURNAL OF APPLIED CRYSTALLOGRAPHY, 2000, 33 (02) :899-908
[8]   Crystal structure of melaminium orthophosphate from high-resolution synchrotron powder-diffraction data [J].
De Ridder, DJA ;
Goubitz, K ;
Brodski, V ;
Peschar, R ;
Schenk, H .
HELVETICA CHIMICA ACTA, 2004, 87 (07) :1894-1905
[9]   CORRECTION OF INTENSITIES FOR PREFERRED ORIENTATION IN POWDER DIFFRACTOMETRY - APPLICATION OF THE MARCH MODEL [J].
DOLLASE, WA .
JOURNAL OF APPLIED CRYSTALLOGRAPHY, 1986, 19 (pt 4) :267-272
[10]   PowderSolve -: a complete package for crystal structure solution from powder diffraction patterns [J].
Engel, GE ;
Wilke, S ;
König, O ;
Harris, KDM ;
Leusen, FJJ .
JOURNAL OF APPLIED CRYSTALLOGRAPHY, 1999, 32 :1169-1179