Crystallization and preliminary X-ray analysis of α-xylosidase from Escherichia coli

被引:5
作者
Kitamura, M
Ose, T
Okuyama, M
Watanabe, H
Yao, M
Mori, H
Kimura, A
Tanaka, I [1 ]
机构
[1] Hokkaido Univ, Grad Sch Sci, Div Biol Sci, Sapporo, Hokkaido, Japan
[2] Hokkaido Univ, Grad Sch Agr, Div Appl Biosci, Sapporo, Hokkaido 0608589, Japan
来源
ACTA CRYSTALLOGRAPHICA SECTION F-STRUCTURAL BIOLOGY COMMUNICATIONS | 2005年 / 61卷
关键词
D O I
10.1107/S1744309104033202
中图分类号
Q5 [生物化学];
学科分类号
071010 ; 081704 ;
摘要
Glycoside hydrolases have been implicated in many biological processes. To date, they have been classified into 93 glycoside hydrolase (GH) families based on amino-acid sequence similarity. alpha-Xylosidase from Escherichia coli belongs to GH family 31 and catalyzes the release of alpha-xylose from the non-reducing terminal side of alpha-xyloside. Single crystals of alpha-xylosidase have been grown by vapour diffusion at 293 K from 10%( w/v) PEG 20 K, 2%(v/v) 2-propanol, 2% (v/v) glycerol and 0.1 M 2-morpholinoethanesulfonic acid pH 5.5. These crystals belong to space group P2(1)2(1)2(1) and X-ray diffraction data were collected to a resolution of 2.75 angstrom. Crystals of selenomethionyl-substituted alpha-xylosidase were also obtained, which diffracted to at least 3.0 angstrom. Based on the value of V-M, the asymmetric unit in these crystals was assumed to contain six molecules.
引用
收藏
页码:178 / 179
页数:2
相关论文
共 9 条
[1]   Molecular characterisation of a xyloglucan oligosaccharide-acting α-D-xylosidase from nasturtium (Tropaeolum majus L.) cotyledons that resembles plant 'apoplastic' α-D-glucosidases [J].
Crombie, HJ ;
Chengappa, S ;
Jarman, C ;
Sidebottom, C ;
Reid, JSG .
PLANTA, 2002, 214 (03) :406-413
[2]   Updating the sequence-based classification of glycosyl hydrolases [J].
Henrissat, B ;
Bairoch, A .
BIOCHEMICAL JOURNAL, 1996, 316 :695-696
[3]   A CLASSIFICATION OF GLYCOSYL HYDROLASES BASED ON AMINO-ACID-SEQUENCE SIMILARITIES [J].
HENRISSAT, B .
BIOCHEMICAL JOURNAL, 1991, 280 :309-316
[4]   NEW FAMILIES IN THE CLASSIFICATION OF GLYCOSYL HYDROLASES BASED ON AMINO-ACID-SEQUENCE SIMILARITIES [J].
HENRISSAT, B ;
BAIROCH, A .
BIOCHEMICAL JOURNAL, 1993, 293 :781-788
[5]   SOLVENT CONTENT OF PROTEIN CRYSTALS [J].
MATTHEWS, BW .
JOURNAL OF MOLECULAR BIOLOGY, 1968, 33 (02) :491-+
[6]   Identification and molecular characterization of the first α-xylosidase from an Archaeon [J].
Moracci, M ;
Cobucci-Ponzano, B ;
Trincone, A ;
Fusco, S ;
De Rosa, M ;
van der Oost, J ;
Sensen, CW ;
Charlebois, RL ;
Rossi, M .
JOURNAL OF BIOLOGICAL CHEMISTRY, 2000, 275 (29) :22082-22089
[7]   Overexpression and characterization of two unknown proteins, YicI and YihQ, originated from Escherichia coli [J].
Okuyama, M ;
Mori, H ;
Chiba, S ;
Kimura, A .
PROTEIN EXPRESSION AND PURIFICATION, 2004, 37 (01) :170-179
[8]   Processing of X-ray diffraction data collected in oscillation mode [J].
Otwinowski, Z ;
Minor, W .
MACROMOLECULAR CRYSTALLOGRAPHY, PT A, 1997, 276 :307-326
[9]   Cloning and expression pattern of a gene encoding an α-xylosidase active against xyloglucan oligosaccharides from Arabidopsis [J].
Sampedro, J ;
Sieiro, C ;
Revilla, G ;
González-Villa, T ;
Zarra, I .
PLANT PHYSIOLOGY, 2001, 126 (02) :910-920