The immune epitope database (IEDB) 3.0

被引：782

作者：

Vita, Randi ^{[1
]}

Overton, James A. ^{[1
]}

Greenbaum, Jason A. ^{[2
]}

Ponomarenko, Julia ^{[3
]}

Clark, Jason D. ^{[4
]}

Cantrell, Jason R. ^{[4
]}

Wheeler, Daniel K. ^{[4
]}

Gabbard, Joseph L. ^{[5
]}

Hix, Deborah ^{[5
]}

Sette, Alessandro ^{[1
]}

Peters, Bjoern ^{[1
]}

机构：

[1] La Jolla Inst Allergy & Immunol, La Jolla, CA 92037 USA

[2] La Jolla Inst Allergy & Immunol, Bioinformat Core, La Jolla, CA 92037 USA

[3] Univ Calif San Diego, San Diego Supercomp Ctr, San Diego, CA 92093 USA

[4] Leidos Hlth LLC, San Diego, CA 92121 USA

[5] Virginia Polytech Inst & State Univ, Grado Dept Ind & Syst Engn, Blacksburg, VA 24061 USA

来源：

NUCLEIC ACIDS RESEARCH | 2015年 / 43卷 / D1期

基金：

美国国家卫生研究院;

关键词：

RESOURCES; ONTOLOGY;

D O I：

10.1093/nar/gku938

中图分类号：

Q5 [生物化学]; Q7 [分子生物学];

学科分类号：

071010 ; 081704 ;

摘要：

The IEDB, ext-link-type="uri" xlink:href="http://www.iedb.org" xlink:type="simple">www.iedb.org, contains information on immune epitopes-the molecular targets of adaptive immune responses-curated from the published literature and submitted by National Institutes of Health funded epitope discovery efforts. From 2004 to 2012 the IEDB curation of journal articles published since 1960 has caught up to the present day, with > 95% of relevant published literature manually curated amounting to more than 15 000 journal articles and more than 704 000 experiments to date. The revised curation target since 2012 has been to make recent research findings quickly available in the IEDB and thereby ensure that it continues to be an up-to-date resource. Having gathered a comprehensive dataset in the IEDB, a complete redesign of the query and reporting interface has been performed in the IEDB 3.0 release to improve how end users can access this information in an intuitive and biologically accurate manner. We here present this most recent release of the IEDB and describe the user testing procedures as well as the use of external ontologies that have enabled it.

引用

页码：D405 / D412

页数：8

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