Chromosome-level genome assembly of the Verasper variegatus provides insights into left eye migration

被引：1
作者：
Xu, Xi-wen [1 ,2 ]
Chen, Zhangfan [1 ,2 ]
Liu, Changlin [1 ]
Xu, Wenteng [1 ,2 ]
Xu, Hao [1 ,2 ]
Chen, Songlin [1 ,2 ]
机构：
[1] Chinese Acad Fishery Sci, Yellow Sea Fisheries Res Inst, Pilot Natl Lab Marine Sci & Technol, Lab Marine Fisheries Sci & Food Prod Proc, Qingdao, Peoples R China
[2] Minist Agr, Key Lab Sustainable Dev Marine Fisheries, Qingdao, Peoples R China
来源：
FRONTIERS IN MARINE SCIENCE | 2022年 / 9卷
基金：
国家重点研发计划; 中国国家自然科学基金;
关键词：
Verasper variegatus; genome sequencing; genome assembly; genome annotation; comparative genomic analysis; LEFT-RIGHT ASYMMETRY; SPOTTED HALIBUT; MUTATIONS; FLATFISH; PROTEIN; DISORDERS; APOPTOSIS; ALIGNMENT; FLOUNDER; REVEALS;
D O I：
10.3389/fmars.2022.1045052
中图分类号：
X [环境科学、安全科学];
学科分类号：
08 ; 0830 ;
摘要：
引用
收藏
页数：11
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共 70 条
[61]   Disorders of Left-Right Asymmetry: Heterotaxy and Situs Inversus [J].
Sutherland, Mardi J. ;
Ware, Stephanie M. .
AMERICAN JOURNAL OF MEDICAL GENETICS PART C-SEMINARS IN MEDICAL GENETICS, 2009, 151C (04) :307-317
[62]   Cryopreservation of spotted halibut (Verasper variegatus) sperm [J].
Tian, Y. S. ;
Chen, S. L. ;
Ji, X. S. ;
Zhai, J. M. ;
Sun, L. J. ;
Chen, C. ;
Su, P. Z. .
AQUACULTURE, 2008, 284 (1-4) :268-271
[63]   Cilia are required for asymmetric nodal induction in the sea urchin embryo [J].
Tisler, Matthias ;
Wetzel, Franziska ;
Mantino, Sabrina ;
Kremnyov, Stanislav ;
Thumberger, Thomas ;
Schweickert, Axel ;
Blum, Martin ;
Vick, Philipp .
BMC DEVELOPMENTAL BIOLOGY, 2016, 16
[64]   GenomeScope: fast reference-free genome profiling from short reads [J].
Vurture, Gregory W. ;
Sedlazeck, Fritz J. ;
Nattestad, Maria ;
Underwood, Charles J. ;
Fang, Han ;
Gurtowski, James ;
Schatz, Michael C. .
BIOINFORMATICS, 2017, 33 (14) :2202-2204
[65]   Effects of low-salinity on the growth and development of spotted halibut Verasper variegatus in the larva-juvenile transformation period with reference to pituitary prolactin and gill chloride cells responses [J].
Wada, T ;
Aritaki, M ;
Tanaka, M .
JOURNAL OF EXPERIMENTAL MARINE BIOLOGY AND ECOLOGY, 2004, 308 (01) :113-126
[66]   Habitat utilization, feeding, and growth of wild spotted halibut Verasper variegatus in a shallow brackish lagoon: Matsukawa-ura, northeastern Japan [J].
Wada, Toshihiro ;
Kamiyama, Kyoichi ;
Shimamura, Shinya ;
Matsumoto, Ikuo ;
Mizuno, Takuji ;
Nemoto, Yoshiharu .
FISHERIES SCIENCE, 2011, 77 (05) :785-793
[67]   Pilon: An Integrated Tool for Comprehensive Microbial Variant Detection and Genome Assembly Improvement [J].
Walker, Bruce J. ;
Abeel, Thomas ;
Shea, Terrance ;
Priest, Margaret ;
Abouelliel, Amr ;
Sakthikumar, Sharadha ;
Cuomo, Christina A. ;
Zeng, Qiandong ;
Wortman, Jennifer ;
Young, Sarah K. ;
Earl, Ashlee M. .
PLOS ONE, 2014, 9 (11)
[68]   Molecular Cloning and Differential Expression of Three GnRH Genes during Ovarian Maturation of Spotted Halibut, Verasper variegatus [J].
Xu, Yong-Jiang ;
Liu, Xue-Zhou ;
Liao, Mei-Jie ;
Wang, Han-Ping ;
Wang, Qing-Yin .
JOURNAL OF EXPERIMENTAL ZOOLOGY PART A-ECOLOGICAL GENETICS AND PHYSIOLOGY, 2012, 317A (07) :434-446
[69]   PAML 4: Phylogenetic analysis by maximum likelihood [J].
Yang, Ziheng .
MOLECULAR BIOLOGY AND EVOLUTION, 2007, 24 (08) :1586-1591
[70]   Cilia-driven asymmetric Hedgehog signalling determines the amphioxus left-right axis by controlling Dand5 expression [J].
Zhu, Xin ;
Shi, Chenggang ;
Zhong, Yanhong ;
Liu, Xian ;
Yan, Qiuning ;
Wu, Xiaotong ;
Wang, Yiquan ;
Li, Guang .
DEVELOPMENT, 2020, 147 (01)
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