TMCrys: predict propensity of success for transmembrane protein crystallization

被引:5
作者
Varga, Julia K. [1 ]
Tusnady, Gabor E. [1 ]
机构
[1] Hungarian Acad Sci, Res Ctr Nat Sci, Momentum Membrane Prot Bioinformat Res Grp, Inst Enzymol, H-1117 Budapest, Hungary
基金
匈牙利科学研究基金会;
关键词
MEMBRANE-PROTEINS; STRUCTURAL GENOMICS; WEB SERVER; NEXT-GENERATION; SEQUENCES; DATABASE; PACKAGE;
D O I
10.1093/bioinformatics/bty342
中图分类号
Q5 [生物化学];
学科分类号
071010 ; 081704 ;
摘要
Motivation: Transmembrane proteins (TMPs) are crucial in the life of the cells. As they have special properties, their structure is hard to determine-the PDB database consists of 2% TMPs, despite the fact that they are predicted to make up to 25% of the human proteome. Crystallization prediction methods were developed to aid the target selection for structure determination, however, there is a need for a TMP specific service. Results: Here, we present TMCrys, a crystallization prediction method that surpasses existing prediction methods in performance thanks to its specialization for TMPs. We expect TMCrys to improve target selection of TMPs.
引用
收藏
页码:3126 / 3130
页数:5
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