Understanding nucleosome dynamics and their links to gene expression and DNA replication

被引:346
作者
Lai, William K. M. [1 ]
Pugh, B. Franklin [1 ]
机构
[1] Penn State Univ, Ctr Eukaryot Gene Regulat, Dept Biochem & Mol Biol, University Pk, PA 16802 USA
基金
美国国家卫生研究院;
关键词
RNA-POLYMERASE-II; CHROMATIN REMODELING COMPLEXES; CENP-A NUCLEOSOMES; IN-VIVO; SACCHAROMYCES-CEREVISIAE; BUDDING YEAST; CHIP-SEQ; HISTONE MODIFICATIONS; EUKARYOTIC GENOME; TRANSCRIPTIONAL ACTIVATION;
D O I
10.1038/nrm.2017.47
中图分类号
Q2 [细胞生物学];
学科分类号
071009 ; 090102 ;
摘要
Advances in genomics technology have provided the means to probe myriad chromatin interactions at unprecedented spatial and temporal resolution. This has led to a profound understanding of nucleosome organization within the genome, revealing that nucleosomes are highly dynamic. Nucleosome dynamics are governed by a complex interplay of histone composition, histone post-translational modifications, nucleosome occupancy and positioning within chromatin, which are influenced by numerous regulatory factors, including general regulatory factors, chromatin remodellers, chaperones and polymerases. It is now known that these dynamics regulate diverse cellular processes ranging from gene transcription to DNA replication and repair.
引用
收藏
页码:548 / 562
页数:15
相关论文
共 178 条
[1]  
ADAMS CC, 1995, MOL CELL BIOL, V15, P1405
[2]   Structural evidence for Nap1-dependent H2A-H2B deposition and nucleosome assembly [J].
Aguilar-Gurrieri, Carmen ;
Larabi, Amede ;
Vinayachandran, Vinesh ;
Patel, Nisha A. ;
Yen, Kuangyu ;
Reja, Rohit ;
Ebong, Ima-O ;
Schoehn, Guy ;
Robinson, Carol V. ;
Pugh, B. Franklin ;
Panne, Daniel .
EMBO JOURNAL, 2016, 35 (13) :1465-1482
[3]   Analyzing and minimizing PCR amplification bias in Illumina sequencing libraries [J].
Aird, Daniel ;
Ross, Michael G. ;
Chen, Wei-Sheng ;
Danielsson, Maxwell ;
Fennell, Timothy ;
Russ, Carsten ;
Jaffe, David B. ;
Nusbaum, Chad ;
Gnirke, Andreas .
GENOME BIOLOGY, 2011, 12 (02)
[4]   Translational and rotational settings of H2A.Z nucleosomes across the Saccharomyces cerevisiae genome [J].
Albert, Istvan ;
Mavrich, Travis N. ;
Tomsho, Lynn P. ;
Qi, Ji ;
Zanton, Sara J. ;
Schuster, Stephan C. ;
Pugh, B. Franklin .
NATURE, 2007, 446 (7135) :572-576
[5]   Sequence and position-dependence of the equilibrium accessibility of nucleosomal DNA target sites [J].
Anderson, JD ;
Widom, J .
JOURNAL OF MOLECULAR BIOLOGY, 2000, 296 (04) :979-987
[6]   The Fork in the Road: Histone Partitioning During DNA Replication [J].
Annunziato, Anthony T. .
GENES, 2015, 6 (02) :353-371
[7]   Split decision: What happens to nucleosomes during DNA replication? [J].
Annunziato, AT .
JOURNAL OF BIOLOGICAL CHEMISTRY, 2005, 280 (13) :12065-12068
[8]   Structural Analysis of the Hexasome, Lacking One Histone H2A/H2B Dimer from the Conventional Nucleosome [J].
Arimura, Yasuhiro ;
Tachiwana, Hiroaki ;
Oda, Takashi ;
Sato, Mamoru ;
Kurumizaka, Hitoshi .
BIOCHEMISTRY, 2012, 51 (15) :3302-3309
[9]   ISWI chromatin remodeling complexes in the DNA damage response [J].
Aydin, Ozge Z. ;
Vermeulen, Wim ;
Lans, Hannes .
CELL CYCLE, 2014, 13 (19) :3016-3025
[10]   Chromatin dynamics during DNA replication [J].
Bar-Ziv, Raz ;
Voichek, Yoav ;
Barkai, Naama .
GENOME RESEARCH, 2016, 26 (09) :1245-1256