Conditional reversible work method for molecular coarse graining applications

被引:82
作者
Brini, Emiliano [1 ]
Marcon, Valentina [1 ]
van der Vegt, Nico F. A. [1 ]
机构
[1] Tech Univ Darmstadt, Ctr Smart Interfaces, D-64287 Darmstadt, Germany
关键词
LINEAR CONSTRAINT SOLVER; INTERACTION POTENTIALS; FORCE-FIELD; SIMULATIONS; DYNAMICS; MODEL; CRYSTALS; SYSTEMS; LINCS; ATOM;
D O I
10.1039/c0cp02888f
中图分类号
O64 [物理化学(理论化学)、化学物理学];
学科分类号
070304 ; 081704 ;
摘要
Systematically coarse grained models for complex fluids usually lack chemical and thermodynamic transferability. Efforts to improve transferability require the development of effective potentials with unequivocal physical significance. In this paper, we introduce conditional reversible work (CRW) potentials that describe nonbonded interactions in coarse grained models at the pair level. The method used to obtain these potentials is straightforward to implement, can be readily extended to compute hydration contributions in implicit-solvent potentials, and is easy to automize. As a first illustration of the method, we present CRW potentials for 3-site models of hexane and toluene. The temperature-transferability of the liquid phase density obtained with these potentials has been investigated, and a comparison has been made with effective potentials obtained by the iterative Boltzmann inversion method.
引用
收藏
页码:10468 / 10474
页数:7
相关论文
共 31 条
[21]   Coarse grained model for semiquantitative lipid simulations [J].
Marrink, SJ ;
de Vries, AH ;
Mark, AE .
JOURNAL OF PHYSICAL CHEMISTRY B, 2004, 108 (02) :750-760
[22]   Mapping of explicit atom onto united atom potentials [J].
McCoy, JD ;
Curro, JG .
MACROMOLECULES, 1998, 31 (26) :9362-9368
[23]   A coarse grain model for n-alkanes parameterized from surface tension data [J].
Nielsen, SO ;
Lopez, CF ;
Srinivas, G ;
Klein, ML .
JOURNAL OF CHEMICAL PHYSICS, 2003, 119 (14) :7043-7049
[24]   Multiscale coarse-graining and structural correlations: Connections to liquid-state theory [J].
Noid, W. G. ;
Chu, Jhih-Wei ;
Ayton, Gary S. ;
Voth, Gregory A. .
JOURNAL OF PHYSICAL CHEMISTRY B, 2007, 111 (16) :4116-4127
[25]   CONSTANT PRESSURE MOLECULAR-DYNAMICS FOR MOLECULAR-SYSTEMS [J].
NOSE, S ;
KLEIN, ML .
MOLECULAR PHYSICS, 1983, 50 (05) :1055-1076
[26]   POLYMORPHIC TRANSITIONS IN SINGLE-CRYSTALS - A NEW MOLECULAR-DYNAMICS METHOD [J].
PARRINELLO, M ;
RAHMAN, A .
JOURNAL OF APPLIED PHYSICS, 1981, 52 (12) :7182-7190
[27]   Deriving effective mesoscale potentials from atomistic simulations [J].
Reith, D ;
Pütz, M ;
Müller-Plathe, F .
JOURNAL OF COMPUTATIONAL CHEMISTRY, 2003, 24 (13) :1624-1636
[28]   Versatile Object-Oriented Toolkit for Coarse-Graining Applications [J].
Ruehle, Victor ;
Junghans, Christoph ;
Lukyanov, Alexander ;
Kremer, Kurt ;
Andrienko, Denis .
JOURNAL OF CHEMICAL THEORY AND COMPUTATION, 2009, 5 (12) :3211-3223
[29]   Hybrid simulations: combining atomistic and coarse-grained force fields using virtual sites [J].
Rzepiela, Andrzej J. ;
Louhivuori, Martti ;
Peter, Christine ;
Marrink, Siewert J. .
PHYSICAL CHEMISTRY CHEMICAL PHYSICS, 2011, 13 (22) :10437-10448
[30]   A coarse grain model for phospholipid simulations [J].
Shelley, JC ;
Shelley, MY ;
Reeder, RC ;
Bandyopadhyay, S ;
Klein, ML .
JOURNAL OF PHYSICAL CHEMISTRY B, 2001, 105 (19) :4464-4470