Structure, mechanism, and inhibition of Hedgehog acyltransferase

被引:39
作者
Coupland, Claire E. [1 ]
Andrei, Sebastian A. [2 ]
Ansell, T. Bertie [3 ]
Carrique, Loic [1 ]
Kumar, Pramod [1 ]
Sefer, Lea [1 ]
Schwab, Rebekka A. [1 ]
Byrne, Eamon F. X. [1 ,8 ]
Pardon, Els [4 ,5 ]
Steyaert, Jan [4 ,5 ]
Magee, Anthony, I [6 ]
Lanyon-Hogg, Thomas [7 ]
Sansom, Mark S. P. [3 ]
Tate, Edward W. [2 ]
Siebold, Christian [1 ]
机构
[1] Univ Oxford, Wellcome Ctr Human Genet, Div Struct Biol, Roosevelt Dr, Oxford OX3 7BN, England
[2] Imperial Coll London, Dept Chem, 82 Wood Lane, London W12 OBZ, England
[3] Univ Oxford, Dept Biochem, South Parks Rd, Oxford OX1 3QU, England
[4] Vrije Univ Brussel VUB, Struct Biol Brussels, Pl Laan 2, B-1050 Brussels, Belgium
[5] Vlaams Inst Biotechnol VIB, VIB VUB Ctr Struct Biol, Pl Laan 2, B-1050 Brussels, Belgium
[6] Imperial Coll London, Natl Heart & Lung Inst, Exhibit Rd, London SW7 2AZ, England
[7] Univ Oxford, Dept Pharmacol, Mansfield Rd, Oxford OX1 3QT, England
[8] Stanford Univ, Dept Bioengn, 443 Via Ortega, Stanford, CA 94305 USA
基金
英国生物技术与生命科学研究理事会;
关键词
STRUCTURE VALIDATION; CRYO-EM; PALMITOYLATION; IDENTIFICATION; PROTEINS; VISUALIZATION; RECOGNITION; ALGORITHMS; GENERATION; REFINEMENT;
D O I
10.1016/j.molcel.2021.11.018
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
The Sonic Hedgehog (SHH) morphogen pathway is fundamental for embryonic development and stem cell maintenance and is implicated in various cancers. A key step in signaling is transfer of a palmitate group to the SHH N terminus, catalyzed by the multi-pass transmembrane enzyme Hedgehog acyltransferase (HHAT). We present the high-resolution cryo-EM structure of HHAT bound to substrate analog palmityl-coenzyme A and a SHH-mimetic megabody, revealing a heme group bound to HHAT that is essential for HHAT function. A structure of HHAT bound to potent small-molecule inhibitor IMP-1575 revealed conformational changes in the active site that occlude substrate binding. Our multidisciplinary analysis provides a detailed view of the mechanism by which HHAT adapts the membrane environment to transfer an acyl chain across the endoplasmic reticulum membrane. This structure of a membrane-bound O-acyltransferase (MBOAT) superfamily member provides a blueprint for other protein-substrate MBOATs and a template for future drug discovery.
引用
收藏
页码:5025 / +
页数:25
相关论文
共 94 条
[1]   Biallelic novel missense HHAT variant causes syndromic microcephaly and cerebellar-vermis hypoplasia [J].
Abdel-Salam, Ghada M. H. ;
Mazen, Inas ;
Eid, Maha ;
Ewida, Nour ;
Shaheen, Ranad ;
Alkuraya, Fowzan S. .
AMERICAN JOURNAL OF MEDICAL GENETICS PART A, 2019, 179 (06) :1053-1057
[2]   PHENIX: a comprehensive Python']Python-based system for macromolecular structure solution [J].
Adams, Paul D. ;
Afonine, Pavel V. ;
Bunkoczi, Gabor ;
Chen, Vincent B. ;
Davis, Ian W. ;
Echols, Nathaniel ;
Headd, Jeffrey J. ;
Hung, Li-Wei ;
Kapral, Gary J. ;
Grosse-Kunstleve, Ralf W. ;
McCoy, Airlie J. ;
Moriarty, Nigel W. ;
Oeffner, Robert ;
Read, Randy J. ;
Richardson, David C. ;
Richardson, Jane S. ;
Terwilliger, Thomas C. ;
Zwart, Peter H. .
ACTA CRYSTALLOGRAPHICA SECTION D-STRUCTURAL BIOLOGY, 2010, 66 :213-221
[3]   Real-space refinement in PHENIX for cryo-EM and crystallography [J].
Afonine, Pavel V. ;
Poon, Billy K. ;
Read, Randy J. ;
Sobolev, Oleg V. ;
Terwilliger, Thomas C. ;
Urzhumtsev, Alexandre ;
Adams, Paul D. .
ACTA CRYSTALLOGRAPHICA SECTION D-STRUCTURAL BIOLOGY, 2018, 74 :531-544
[4]   Exome Sequencing Identifies Three Novel Candidate Genes Implicated in Intellectual Disability [J].
Agha, Zehra ;
Iqbal, Zafar ;
Azam, Maleeha ;
Ayub, Humaira ;
Vissers, Lisenka E. L. M. ;
Gilissen, Christian ;
Ali, Syeda Hafiza Benish ;
Riaz, Moeen ;
Veltman, Joris A. ;
Pfundt, Rolph ;
van Bokhoven, Hans ;
Qamar, Raheel .
PLOS ONE, 2014, 9 (11)
[5]   A time- and cost-efficient system for high-level protein production in mammalian cells [J].
Aricescu, A. Radu ;
Lu, Weixian ;
Jones, E. Yvonne .
ACTA CRYSTALLOGRAPHICA SECTION D-STRUCTURAL BIOLOGY, 2006, 62 :1243-1250
[6]  
Asarnow D., 2019, UCSF PYEM VERSION 0
[7]   Hedgehog Acyltransferase Promotes Uptake of Palmitoyl-CoA across the Endoplasmic Reticulum Membrane [J].
Asciolla, James J. ;
Resh, Marilyn D. .
CELL REPORTS, 2019, 29 (13) :4608-+
[8]   ConSurf 2010: calculating evolutionary conservation in sequence and structure of proteins and nucleic acids [J].
Ashkenazy, Haim ;
Erez, Elana ;
Martz, Eric ;
Pupko, Tal ;
Ben-Tal, Nir .
NUCLEIC ACIDS RESEARCH, 2010, 38 :W529-W533
[9]   Structural insights into hedgehog ligand sequestration by the human hedgehog-interacting protein HHIP [J].
Bishop, Benjamin ;
Aricescu, A. Radu ;
Harlos, Karl ;
O'Callaghan, Chris A. ;
Jones, E. Yvonne ;
Siebold, Christian .
NATURE STRUCTURAL & MOLECULAR BIOLOGY, 2009, 16 (07) :698-U29
[10]   Promoting transparency and reproducibility in enhanced molecular simulations [J].
Bonomi, Massimiliano ;
Bussi, Giovanni ;
Camilloni, Carlo ;
Tribello, Gareth A. ;
Banas, Pavel ;
Barducci, Alessandro ;
Bernetti, Mattia ;
Bolhuis, Peter G. ;
Bottaro, Sandro ;
Branduardi, Davide ;
Capelli, Riccardo ;
Carloni, Paolo ;
Ceriotti, Michele ;
Cesari, Andrea ;
Chen, Haochuan ;
Chen, Wei ;
Colizzi, Francesco ;
De, Sandip ;
De La Pierre, Marco ;
Donadio, Davide ;
Drobot, Viktor ;
Ensing, Bernd ;
Ferguson, Andrew L. ;
Filizola, Marta ;
Fraser, James S. ;
Fu, Haohao ;
Gasparotto, Piero ;
Gervasio, Francesco Luigi ;
Giberti, Federico ;
Gil-Ley, Alejandro ;
Giorgino, Toni ;
Heller, Gabriella T. ;
Hocky, Glen M. ;
Iannuzzi, Marcella ;
Invernizzi, Michele ;
Jelfs, Kim E. ;
Jussupow, Alexander ;
Kirilin, Evgeny ;
Laio, Alessandro ;
Limongelli, Vittorio ;
Lindorff-Larsen, Kresten ;
Lohr, Thomas ;
Marinelli, Fabrizio ;
Martin-Samos, Layla ;
Masetti, Matteo ;
Meyer, Ralf ;
Michaelides, Angelos ;
Molteni, Carla ;
Morishita, Tetsuya ;
Nava, Marco .
NATURE METHODS, 2019, 16 (08) :670-673