Bhargavaea massiliensis sp. nov. and Dietzia massiliensis sp. nov., Novel Bacteria Species Isolated from Human Urine Samples in Nigeria

被引:5
作者
Olowo-okere, Ahmed [1 ]
Ibrahim, Yakubu Kokori Enevene [2 ]
Lo, Cheikh Ibrahima [3 ]
Olayinka, Busayo Olalekan [2 ]
Yimagou, Edmond Kuete [3 ]
Yacouba, Abdourahamane [3 ]
Mohammed, Yahaya [4 ]
Nabti, Larbi Zakaria [5 ]
Ragueh, Ayan Ali [4 ]
Lupande, David [3 ]
Raoult, Didier
Rolain, Jean-Marc [3 ]
Diene, Seydina M. [3 ,6 ]
机构
[1] Usmanu Danfodiyo Univ, Dept Pharmaceut & Pharmaceut Microbiol, Sokoto, Nigeria
[2] Ahmadu Bello Univ, Dept Pharmaceut & Pharmaceut Microbiol, Zaria, Nigeria
[3] Aix Marseille Univ, IRD, AP HM, MEPHI,IHU Mediterranee Infect, Marseille, France
[4] Usmanu Danfodiyo Univ, Coll Hlth Sci, Fac Basic Med Sci, Dept Med Microbiol, Sokoto, Nigeria
[5] Univ Mohamed Boudiaf, Dept Biochim & Microbiol, Fac Sci, BP 166, Msila 28000, Algeria
[6] Inst Hosp Univ Mediterranee Infect, 19-21 Blvd Jean Moulin, F-13385 Marseille 05, France
关键词
IDENTIFICATION; ALGORITHM; TAXONOMY;
D O I
10.1007/s00284-021-02721-4
中图分类号
Q93 [微生物学];
学科分类号
071005 ; 100705 ;
摘要
Two novel bacteria species designated Marseille-Q1000(T) and Marseille-Q0999(T) were isolated from urine samples of patients in Sokoto, Northwest-Nigeria. They were Gram-positive bacteria and belong to two different genera, Bhargavaea and Dietzia. The genome size and G + C content of Marseille-Q1000(T) and Marseille-Q0999(T) were 3.07 and 3.51 Mbp with 53.8 and 71.0 mol% G + C content, respectively. The strains exhibited unique phenotypic and genomic features that are substantially different from previously known bacterial species with standing in nomenclature. On the basis of the phenotypic, phylogenetic and genomic characteristics, strains Marseille-Q0999(T) (= CSURQ0999 = DSM 112394) and Marseille-Q1000(T) (= CSURQ1000 = DSM 112384) were proposed as the type strains of Bhargavaea massiliensis sp. nov., and Dietzia massiliensis sp. nov., respectively.
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页数:8
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共 36 条
[1]  
[Anonymous], 2019, BREAKPOINT TABLES IN
[2]   SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell Sequencing [J].
Bankevich, Anton ;
Nurk, Sergey ;
Antipov, Dmitry ;
Gurevich, Alexey A. ;
Dvorkin, Mikhail ;
Kulikov, Alexander S. ;
Lesin, Valery M. ;
Nikolenko, Sergey I. ;
Son Pham ;
Prjibelski, Andrey D. ;
Pyshkin, Alexey V. ;
Sirotkin, Alexander V. ;
Vyahhi, Nikolay ;
Tesler, Glenn ;
Alekseyev, Max A. ;
Pevzner, Pavel A. .
JOURNAL OF COMPUTATIONAL BIOLOGY, 2012, 19 (05) :455-477
[3]   RETRACTED: Passive Filtration, Rapid Scanning Electron Microscopy, and Matrix-Assisted Laser Desorption Ionization-Time of Flight Mass Spectrometry for Treponema Culture and Identification from the Oral Cavity (Retracted Article) [J].
Belkacemi, Souad ;
Khalil, Jacques Bou ;
Ominami, Yusuke ;
Hisada, Akiko ;
Fontanini, Anthony ;
Caputo, Aurelia ;
Levasseur, Anthony ;
Lagier, Jean-Christophe ;
Khelaifia, Saber ;
Raoult, Didier .
JOURNAL OF CLINICAL MICROBIOLOGY, 2019, 57 (10)
[4]   antiSMASH 5.0: updates to the secondary metabolite genome mining pipeline [J].
Blin, Kai ;
Shaw, Simon ;
Steinke, Katharina ;
Villebro, Rasmus ;
Ziemert, Nadine ;
Lee, Sang Yup ;
Medema, Marnix H. ;
Weber, Tilmann .
NUCLEIC ACIDS RESEARCH, 2019, 47 (W1) :W81-W87
[5]   Genome and pan-genome analysis to classify emerging bacteria [J].
Caputo, Aurelia ;
Fournier, Pierre-Edouard ;
Raoult, Didier .
BIOLOGY DIRECT, 2019, 14 (1)
[6]  
Cheesebrough M.., 2006, DISTRICT LAB PRACTIC, V2, P62, DOI [10.1017/CBO9780511543470, DOI 10.1017/CBO9780511543470]
[7]  
Chun J, 2018, INT J SYST EVOL MICR, V68, P461, DOI [10.1099/ijsem.0.002532, 10.1099/ijsem.0.002516]
[8]  
Dione N., 2016, New Microbes and New Infections, V10, P66, DOI 10.1016/j.nmni.2016.01.002
[9]   From culturomics to taxonomogenomics: A need to change the taxonomy of prokaryotes in clinical microbiology [J].
Fournier, Pierre-Edouard ;
Lagier, Jean-Christophe ;
Dubourg, Gregory ;
Raoult, Didier .
ANAEROBE, 2015, 36 :73-78
[10]   Characterization of bacteria of the genus Dietzia: an updated review [J].
Gharibzahedi, Seyed Mohammad Taghi ;
Razavi, Seyed Hadi ;
Mousavi, Seyed Mohammad .
ANNALS OF MICROBIOLOGY, 2014, 64 (01) :1-11