Impact of spatial dispersion, evolution, and selection on Ebola Zaire Virus epidemic waves

被引:19
作者
Azarian, Taj [1 ,2 ,3 ]
Lo Presti, Alessandra [4 ]
Giovanetti, Marta [4 ]
Cella, Eleonora [4 ]
Rife, Brittany [5 ]
Lai, Alessia [6 ]
Zehender, Gianguglielmo [6 ]
Ciccozzi, Massimo [4 ,7 ]
Salemi, Marco [3 ,5 ]
机构
[1] Univ Florida, Coll Publ Hlth & Hlth Profess, Gainesville, FL USA
[2] Univ Florida, Coll Med, Dept Epidemiol, Gainesville, FL USA
[3] Univ Florida, Emerging Pathogens Inst, Gainesville, FL USA
[4] Ist Super Sanita, Dept Infect Parasit & Immunomediated Dis, I-00161 Rome, Italy
[5] Univ Florida, Dept Pathol Immunol & Lab Med, Gainesville, FL USA
[6] Univ Milan, L Sacco Hosp, Dept Biomed & Clin Sci, Infect Dis & Immunopathol Sect, Milan, Italy
[7] Univ Hosp Campus Biomed, Rome, Italy
关键词
PHYLOGENETIC ANALYSIS; POPULATION-DYNAMICS; GLYCOPROTEIN; INFERENCE; TRANSMISSION; HISTORY; ORIGIN; MODEL; ANTIBODY; DISEASE;
D O I
10.1038/srep10170
中图分类号
O [数理科学和化学]; P [天文学、地球科学]; Q [生物科学]; N [自然科学总论];
学科分类号
07 ; 0710 ; 09 ;
摘要
Ebola virus Zaire (EBOV) has reemerged in Africa, emphasizing the global importance of this pathogen. Amidst the response to the current epidemic, several gaps in our knowledge of EBOV evolution are evident. Specifically, uncertainty has been raised regarding the potential emergence of more virulent viral variants through amino acid substitutions. Glycoprotein (GP), an essential component of the EBOV genome, is highly variable and a potential site for the occurrence of advantageous mutations. For this study, we reconstructed the evolutionary history of EBOV by analyzing 65 GP sequences from humans and great apes over diverse locations across epidemic waves between 1976 and 2014. We show that, although patterns of spatial dispersion throughout Africa varied, the evolution of the virus has largely been characterized by neutral genetic drift. Therefore, the radical emergence of more transmissible variants is unlikely, a positive finding, which is increasingly important on the verge of vaccine deployment.
引用
收藏
页数:9
相关论文
共 52 条
[1]  
[Anonymous], 2014, Ebola virus disease
[2]   Bayesian evolutionary model testing in the phylogenomics era: matching model complexity with computational efficiency [J].
Baele, Guy ;
Lemey, Philippe .
BIOINFORMATICS, 2013, 29 (16) :1970-1979
[3]   Make the most of your samples: Bayes factor estimators for high-dimensional models of sequence evolution [J].
Baele, Guy ;
Lemey, Philippe ;
Vansteelandt, Stijn .
BMC BIOINFORMATICS, 2013, 14
[4]   Accurate Model Selection of Relaxed Molecular Clocks in Bayesian Phylogenetics [J].
Baele, Guy ;
Li, Wai Lok Sibon ;
Drummond, Alexei J. ;
Suchard, Marc A. ;
Lemey, Philippe .
MOLECULAR BIOLOGY AND EVOLUTION, 2013, 30 (02) :239-243
[5]   Emergence of Zaire Ebola Virus Disease in Guinea [J].
Baize, Sylvain ;
Pannetier, Delphine ;
Oestereich, Lisa ;
Rieger, Toni ;
Koivogui, Lamine ;
Magassouba, N'Faly ;
Soropogui, Barre ;
Sow, Mamadou Saliou ;
Keita, Sakoba ;
De Clerck, Hilde ;
Tiffany, Amanda ;
Dominguez, Gemma ;
Loua, Mathieu ;
Traore, Alexis ;
Kolie, Moussa ;
Malano, Emmanuel Roland ;
Heleze, Emmanuel ;
Bocquin, Anne ;
Mely, Stephane ;
Raoul, Herve ;
Caro, Valerie ;
Cadar, Daniel ;
Gabriel, Martin ;
Pahlmann, Meike ;
Tappe, Dennis ;
Schmidt-Chanasit, Jonas ;
Impouma, Benido ;
Diallo, Abdoul Karim ;
Formenty, Pierre ;
Van Herp, Michel ;
Guenther, Stephan .
NEW ENGLAND JOURNAL OF MEDICINE, 2014, 371 (15) :1418-1425
[6]   Recent common ancestry of Ebola Zaire virus found in a bat reservoir [J].
Biek, Roman ;
Walsh, Peter D. ;
Leroy, Eric M. ;
Real, Leslie A. .
PLOS PATHOGENS, 2006, 2 (10) :885-886
[7]   DensiTree: making sense of sets of phylogenetic trees [J].
Bouckaert, Remco R. .
BIOINFORMATICS, 2010, 26 (10) :1372-1373
[8]   Transmission dynamics and control of Ebola virus disease (EVD): a review [J].
Chowell, Gerardo ;
Nishiura, Hiroshi .
BMC MEDICINE, 2014, 12
[9]   jModelTest 2: more models, new heuristics and parallel computing [J].
Darriba, Diego ;
Taboada, Guillermo L. ;
Doallo, Ramon ;
Posada, David .
NATURE METHODS, 2012, 9 (08) :772-772
[10]   Datamonkey 2010: a suite of phylogenetic analysis tools for evolutionary biology [J].
Delport, Wayne ;
Poon, Art F. Y. ;
Frost, Simon D. W. ;
Pond, Sergei L. Kosakovsky .
BIOINFORMATICS, 2010, 26 (19) :2455-2457