Dissecting Electrostatic Contributions to Folding and Self-Assembly Using Designed Multicomponent Peptide Systems

被引:29
作者
Parmar, Avanish S. [1 ]
James, Jose K. [2 ]
Grisham, Daniel R. [2 ]
Pike, Douglas H. [2 ]
Nanda, Vikas [2 ]
机构
[1] Banaras Hindu Univ, Indian Inst Technol, Dept Phys, Varanasi 221005, Uttar Pradesh, India
[2] Rutgers State Univ, Robert Wood Johnson Med Sch, Ctr Adv Biotechnol & Med, Dept Biochem & Mol Biol, 679 Hoes Lane West, Piscataway, NJ 08854 USA
关键词
COLLAGEN TRIPLE-HELIX; PROTEIN-PROTEIN INTERACTION; COILED-COIL; MOLECULAR PACKING; MIMETIC PEPTIDES; RATIONAL DESIGN; SALT BRIDGES; STABILITY; ARGININE; SURFACE;
D O I
10.1021/jacs.5b10304
中图分类号
O6 [化学];
学科分类号
0703 ;
摘要
We investigate formation of nano- to micro scale peptide fibers and sheets where assembly requires association of two distinct collagen mimetic peptides (CMPs). The multicomponent nature of these designs allows the decoupling of amino acid contributions to peptide folding versus higher-order assembly. While both arginine and lysine containing CMP sequences can favor triple-helix folding, only arginine promotes rapid supramolecular assembly in each of the three two-component systems examined. Unlike lysine, the polyvalent guanidyl group of arginine is capable of both intra- and intermolecular contacts, promoting assembly. This is consistent with the supramolecular diversity of CMP morphologies observed throughout the literature. It also connects CMP self-assembly with a broad range of biomolecular interaction phenomena, providing general principles for modeling and design.
引用
收藏
页码:4362 / 4367
页数:6
相关论文
共 71 条
  • [1] Computational Mapping of Anchoring Spots on Protein Surfaces
    Ben-Shimon, Avraham
    Eisenstein, Miriam
    [J]. JOURNAL OF MOLECULAR BIOLOGY, 2010, 402 (01) : 259 - 277
  • [2] Anatomy of hot spots in protein interfaces
    Bogan, AA
    Thorn, KS
    [J]. JOURNAL OF MOLECULAR BIOLOGY, 1998, 280 (01) : 1 - 9
  • [3] BORDERS CL, 1994, PROTEIN SCI, V3, P541
  • [4] Crystal Structure of Human Type III Collagen Gly991-Gly1032 Cystine Knot-containing Peptide Shows Both 7/2 and 10/3 Triple Helical Symmetries
    Boudko, Sergei P.
    Engel, Juergen
    Okuyama, Kenji
    Mizuno, Kazunori
    Baechinger, Hans Peter
    Schumacher, Maria A.
    [J]. JOURNAL OF BIOLOGICAL CHEMISTRY, 2008, 283 (47) : 32580 - 32589
  • [5] The NC2 Domain of Type IX Collagen Determines the Chain Register of the Triple Helix
    Boudko, Sergei P.
    Baechinger, Hans Peter
    [J]. JOURNAL OF BIOLOGICAL CHEMISTRY, 2012, 287 (53) : 44536 - 44545
  • [6] Positional preferences of ionizable residues in Gly-X-Y triplets of the collagen triple-helix
    Chan, VC
    Ramshaw, JAM
    Kirkpatrick, A
    Beck, K
    Brodsky, B
    [J]. JOURNAL OF BIOLOGICAL CHEMISTRY, 1997, 272 (50) : 31441 - 31446
  • [7] The impact of Lys→Arg surface mutations on the crystallization of the globular domain of RhoGDI
    Czepas, J
    Devedjiev, Y
    Krowarsch, D
    Derewenda, U
    Otlewski, J
    Derewenda, ZS
    [J]. ACTA CRYSTALLOGRAPHICA SECTION D-STRUCTURAL BIOLOGY, 2004, 60 : 275 - 280
  • [8] Improved Parameters for the Martini Coarse-Grained Protein Force Field
    de Jong, Djurre H.
    Singh, Gurpreet
    Bennett, W. F. Drew
    Arnarez, Clement
    Wassenaar, Tsjerk A.
    Schafer, Lars V.
    Periole, Xavier
    Tieleman, D. Peter
    Marrink, Siewert J.
    [J]. JOURNAL OF CHEMICAL THEORY AND COMPUTATION, 2013, 9 (01) : 687 - 697
  • [9] A Comparison of DNA Compaction by Arginine and Lysine Peptides: A Physical Basis for Arginine Rich Protarnines
    DeRouchey, Jason
    Hoover, Brandon
    Rau, Donald C.
    [J]. BIOCHEMISTRY, 2013, 52 (17) : 3000 - 3009
  • [10] Salt bridges: Geometrically specific, designable interactions
    Donald, Jason E.
    Kulp, Daniel W.
    DeGrado, William F.
    [J]. PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS, 2011, 79 (03) : 898 - 915